1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCCTAAGTAAGAAAGGTGTGGTTATTCTCCCGGACATATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGgtatgtatgagtctctcaacaacttacctttgacagaccaagtactcgaacaaaaccgattttgatcagattagttgtttccggtaatgtgcag
species | Arabidopsis thaliana |
transcript | AT5G18170.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAG AACATTCAAGGCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAGEST: gi|86055070|gb|DR350827.1|DR350827
genomic: TATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGgtatgtatga ... taatgtgcagAACATTCAAGGCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAG
EST: TATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAG AACATTCAAGGCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAGEST: gi|116428925|gb|EG471517.1|EG471517
genomic: TATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGgtatgtatga ... taatgtgcagAACATTCAAGGCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAG
EST: TATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAG AACATTCAAGGCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAGEST: gi|124953856|gb|EL029002.1|EL029002
genomic: TATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGgtatgtatga ... taatgtgcagAACATTCAAGGCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAG
EST: AGGAGTCACTGTAAGTTACTTCGAATGGGTTCAG AACATTCAAGGCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAGEST: gi|116445672|gb|EG488264.1|EG488264
genomic: AGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGgtatgtatga ... taatgtgcagAACATTCAAGGCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAG
EST: TATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAG AACATTCAAGGCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAG
genomic: TATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGgtatgtatga ... taatgtgcagAACATTCAAGGCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCTAAGTAAGAAAGGTGTGGTTATTCTCCCGGACATATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGgtatgtatgagtctctcaacaacttacctttgacagaccaagtactcgaacaaaaccgattttgatcagattagttgtttccggtaatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG