1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCTCCGGAAGTATGGGATGGTGGTGTTGGATTTGTATCAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAGgtataccctcctctgttcttgatcttgaacataaccaatcatcacaatttctaaattctataatcgatgagtgtcagtgtttcaaagcaaaatcaagaac...
species | Arabidopsis thaliana |
transcript | AT5G17770.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAG ATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCATGGCTGCAAACCTTEST: gi|125041609|gb|EL113878.1|EL113878
genomic: CAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAGgtataccctc ... taaattgcagATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCATGGCTGCAAACCTT
EST: ATCTGATATTCAG ATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCATGGCTGCAAACCTTEST: gi|86066426|gb|DR362183.1|DR362183
genomic: ATCTGATATTCAGgtataccctc ... taaattgcagATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCATGGCTGCAAACCTT
EST: CAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAG ATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCATGGCTGCAAACCTTEST: gi|164056394|gb|EL972866.1|EL972866
genomic: CAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAGgtataccctc ... taaattgcagATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCATGGCTGCAAACCTT
EST: CAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAG ATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCATEST: gi|86066425|gb|DR362182.1|DR362182
genomic: CAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAGgtataccctc ... taaattgcagATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCAT
EST: CAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAG ATCCTAAGATGCGGAC-ACCGCCEST: gi|164232482|gb|EL990866.1|EL990866
genomic: CAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAGgtataccctc ... taaattgcagATCCTAAGATGCGGACCACCGCC
EST: CAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAG ATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCATGEST: gi|86082753|gb|DR378512.1|DR378512
genomic: CAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAGgtataccctc ... taaattgcagATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCATG
EST: CAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAG ATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCATGGCTGCAAACCTT
genomic: CAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAGgtataccctc ... taaattgcagATCCTAAGATGCGGACCACCGCCAATGAACAAGGCCATGGCTGCAAACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCCGGAAGTATGGGATGGTGGTGTTGGATTTGTATCAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAGgtataccctcctctgttcttgatcttgaacataaccaatcatcacaatttctaaattctataatcgatgagtgtcagtgtttcaaagcaaaatcaagaac
- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaga