1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAATTCGTCCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTTGGTCCTGCTGCAAACCGTTTACTAGAAGCATATAATATGCTTTTAAAGgtgccccattgtctccttctatctgtatacttggttgtatcgactatattgagtccatataatttatactttgattctgatacacaaatcgtttggcaacag
species | Arabidopsis thaliana |
transcript | AT5G17620.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTAGAAGCATATAATATGCTTTTAAAG TTCCTAGGGAACTTGAAGAACCTAAGAGACTCACATGCAGCAEST: gi|19740806|gb|AU226159.1|AU226159
genomic: CTAGAAGCATATAATATGCTTTTAAAGgtgccccatt ... ttggcaacagTTCCTAGGGAACTTGAAGAACCTAAGAGACTCACATGCAGCA
EST: TGGTCCTCCTGCAAACCGTTTAGCTAGAAGCATATAATATGCTTTTAAAG TTCCTAGGGAACTTGAAGAACCTAAGAGACTCACATGCAGCACTTTCGAGTEST: gi|86077830|gb|DR373587.1|DR373587
genomic: TGGTCCTGCTGCAAACCGTTTA-CTAGAAGCATATAATATGCTTTTAAAGgtgccccatt ... ttggcaacagTTCCTAGGGAACTTGAAGAACCTAAGAGACTCACATGCAGCACTTTCGA-T
EST: TTGGTCCTGCTGCAAACCGTTTACTAGAAGCATATAATATGCTTTTAAAG TTCCTAGGGAACTTGAAGAACCTAAGAGACTCACATGCAGCACTTTCGATTEST: gi|86088289|gb|DR384048.1|DR384048
genomic: TTGGTCCTGCTGCAAACCGTTTACTAGAAGCATATAATATGCTTTTAAAGgtgccccatt ... ttggcaacagTTCCTAGGGAACTTGAAGAACCTAAGAGACTCACATGCAGCACTTTCGATT
EST: TTGGTCCTGCTGCAAACCGTTTACTAGAAGCATATAATATGCTTTTAAAG TTCCTAGGGAACTTGAAGAACCTAAGAGACTCACATGCAGCACTTTCGATT
genomic: TTGGTCCTGCTGCAAACCGTTTACTAGAAGCATATAATATGCTTTTAAAGgtgccccatt ... ttggcaacagTTCCTAGGGAACTTGAAGAACCTAAGAGACTCACATGCAGCACTTTCGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATTCGTCCATGGACGCATATGATGGAAGTGCCTCAGCTTCATGGTTTTGGTCCTGCTGCAAACCGTTTACTAGAAGCATATAATATGCTTTTAAAGgtgccccattgtctccttctatctgtatacttggttgtatcgactatattgagtccatataatttatactttgattctgatacacaaatcgtttggcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC