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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGATTGGAAAGAAGGTCTGCTATGTTCAGTTCCCTCAAAGGTTTGATGGCATTGACACAAACGATCGTTACGCCAACAGAAACACAGTCTTCTTTGATgtaagactcaattcatatttttccaacttctggtctaaatgaaaatgtaccctcttgcttacactcttgtttgctacag

Basic information

species Arabidopsis thaliana
transcript AT5G17420.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125034691|gb|EL106960.1|EL106960
EST:     CGTTACGCCAACAGAAACACAGTCTTCTTTGAT                         ATCAATATGAAAGGTCTAGATGGAATCCAAGGTCCAGTTTACGTTGGTACT
genomic: CGTTACGCCAACAGAAACACAGTCTTCTTTGATgtaagactca ... tttgctacagATCAATATGAAAGGTCTAGATGGAATCCAAGGTCCAGTTTACGTTGGTACT
EST: gi|124744725|gb|EH835887.1|EH835887
EST:     CGTTACGCCAACAGAAACACAGTCTTCTTTGAT                         ATCAATATGAAAGGTCTAGATGGAATCCAAGGTCCAGTTTACGTTGGTACT
genomic: CGTTACGCCAACAGAAACACAGTCTTCTTTGATgtaagactca ... tttgctacagATCAATATGAAAGGTCTAGATGGAATCCAAGGTCCAGTTTACGTTGGTACT