Sequence
atgc intronic sequence ATGC exonic sequenceGAGGTTTTTCATGGAACTCAATACTCGCCGGATTGATACAAGCGTTGCAAGAAGTGAAACTCTCAGCATCATTAATGGGATGCGTTACTTGAAGCTTGGGgtatgtctcagatatcttagaaaaggcaggcttcagaaagtgaacgtgacagtatgtttatttacag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G15680.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G15680.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA11G06550.1 (Glycine max), 5'ss of exon 7
GAGGTTTTTCATGGAACTCAATACTCGCCGGATTGATACAAGCGTTGCAAGAAGTGAAACTCTCAGCATCATTAATGGGATGCGTTACTTGAAGCTTGGGgtatgtct------cagatatcttag--aaaaggcaggcttcagaaagtg-aacgtgacagtatgtttatttacag
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GCGGTTTTTCATGGAACTCAACACCCGTCGAATTGATACTAGCGCCGCTAGAAGTGAAACGCTTAGTATCATTAATGGGATGCGCTACCTGAAGCTTGGGgtatgtgtaacaattaaatgtttcatgtaaaatattacattatgttagtataatttaaatataagctccttctcag
upper sequence: AT5G15680.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA19G04970.1 (Glycine max), 5'ss of exon 3
GAGGTTTTTCATGGAACTCAATACTCGCCGGATTGATACAAGCGTTGCAAGAAGTGAAACTCTCAGCATCATTAATGGGATGCGTTACTTGAAGCTTGGGgtatgtct------cagatatcttagaaaaggcaggcttcagaa--agtg-aacgtgacagtatgtttatttacag
| ||||||||||||||||||| || || || |||||||| |||| | ||||||||||| || || ||||||||||||||||| ||| ||||||||||||||||| | | || | | | || | | ||| || | | || | | || |||
GCGGTTTTTCATGGAACTCAACACCCGTCGAATTGATACCAGCGCCACTAGAAGTGAAACACTAAGTATCATTAATGGGATGCGGTACCTGAAGCTTGGGgtatgtgtaacaattaaatgtttcatgtaaaatattacatgatattagtataatttaaatataagctccttctcag
upper sequence: AT5G15680.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv14s0083g00750.t01 (Vitis vinifera), 5'ss of exon 7
GAGGTTTTTCATGGAACTCAATACTCGCCGGATTGATACAAGCGTTGCAAGAAGTGAAACTCTCAGCATCATTAATGGGATGCGTTACTTGAAGCTTGGGgtatgtctcagata-----tcttagaaaaggcaggcttcagaaagtgaacgtgacagtatgtttatttacag
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ACGTTTTTTCATGGAACTCAATACTCGTCGTATTGACACTAGTGTTGCCCGAAGTGAAACACTTAGTATCATTAATGGGATGCGCTACCTTAAGCTTGGGgtatgtgtaaaataaattcttctagagaagtttggcatatgggcaaggttataaccattcaataatctccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116437673|gb|EG480265.1|EG480265EST: GAAGTGAAACTCTCAGCATCATTAATGGGATGCGTTACTTGAAGCTTGGG GTTAAGAGTGAGGGTGGGCTGAATGCGTCTGCCTCCTTTGTAGCAAAAGCA
genomic: GAAGTGAAACTCTCAGCATCATTAATGGGATGCGTTACTTGAAGCTTGGGgtatgtctca ... ttatttacagGTTAAGAGTGAGGGTGGGCTGAATGCGTCTGCCTCCTTTGTAGCAAAAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGTTTTTCATGGAACTCAATACTCGCCGGATTGATACAAGCGTTGCAAGAAGTGAAACTCTCAGCATCATTAATGGGATGCGTTACTTGAAGCTTGGGgtatgtctcagatatcttagaaaaggcaggcttcagaaagtgaacgtgacagtatgtttatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC