Sequence
atgc intronic sequence ATGC exonic sequenceTGGCAAAATAGGAGAGTGGCGATTCGATAAGAGATCACATTTGCGGGGTCCTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTGTGgtatgttatatataaacctctataatctgatcgtgcttaaaacaagatactgcagtaaggtccattcatagctcaaaggggaacttatttgtatcatgtc...
Basic information
species | Arabidopsis thaliana |
transcript | AT5G13500.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G13500.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA15G37490.2 (Glycine max), 5'ss of exon 8
TGGCAAAATAGGAGAGTGGCGATTCGATAAGAGATCACATTTGCGGGGTCCTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTGTGgtatgttatatataaacctctataatctgatcgtgcttaaaac-aagatactgcagtaaggtccattcatagctcaaaggggaacttatttgtatcatgtc-
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TGGCAAAATTGGTGAGTGGAGATTTGATAAAAGGTCACATCTACGAGGACCTCCACCAAAAAACTTGCCCTTGCCCCCACCAGGGGTTCCTGAAAGTGTGgtatgtctagaacttgcctat-tgattgaagtgcacttcatcctatcttattggaataatatctagaaagaactgctttctgtgat-acatggaacttgata
upper sequence: AT5G13500.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 7
TGGCAAAATAGGAGAGTGGCGATTCGATAAGAGATCACATTTGCGGGGTCCTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTGTGgtatgttatatataaacctctataatctgatcgtgcttaaaacaagatactgcagtaaggtccattcatagctcaa----aggggaacttatttgtatcatgtc
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TGGGAAAATTGGAGAGTGGCGATTTGACAAGAGATCATACCTACGTGGACCTCCTCCTAGAAACCTTTCCTTGCCGCCTCCAGGGGTTCCTGAAAGTGTGgtatgttcatggtgactccttcacatttcatatacattgttcccatgtatgctgtctacttacaattgaagtcagattccactggcaattgtttatactg----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86075298|gb|DR371055.1|DR371055EST: CTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTGTG GTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGG
genomic: CTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTGTGgtatgttata ... gatggtgcagGTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGCAAAATAGGAGAGTGGCGATTCGATAAGAGATCACATTTGCGGGGTCCTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTGTGgtatgttatatataaacctctataatctgatcgtgcttaaaacaagatactgcagtaaggtccattcatagctcaaaggggaacttatttgtatcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA