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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATCTACATGCTCCCATTAGGTAAAGGTGTTTCTAAGGCTGTGACTTATCACGGTTGGGGAACACCTTATGATTCCTTCTGGTGTTGCTATGGCACTGgtaaactcttaaccacaattcatctggttttctacatttttgtaagatacaaaagtaagataaattttgagggtctttttttgtttctgtccacag

Basic information

species Arabidopsis thaliana
transcript AT5G12950.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12950.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os02g10190.1 (Oryza sativa), 5'ss of exon 8
ATGATCTACATGCTCCCATTAGGTAAAGGTGTTTCTAAGGCTGTGACTTATCACGGTTGGGGAACACCTTATGATTCCTTCTGGTGTTGCTATGGCACTGgtaaa-------ctcttaaccacaattcatctggt-tttctacatttttgt-aagatacaaaagtaa----------gataaattttgag-----ggtctttttttgtttctgtccacag-------------------------------------------------------------------------------
||||| |||||||| ||    |     ||    ||||| || ||  | ||||| ||||||||||||   ||||| |||||||||||||| ||||| || ||||||       ||  | |   |   | || |     | || | |||   | || |||     ||||           || |||   | |      || ||  |||| || |||   ||                                                                                
ATGATTTACATGCTACCTCAGGCCCCTGGACGGTCTAAAGCGGTTTCCTATCATGGTTGGGGAACAAAGTATGACTCCTTCTGGTGTTGTTATGGGACAGgtaaataaaatgcttctgagttctgcttatttaacactgctgcttttacatgaaaatattgcggtaacagtttgtcaaattaataccgtgattttagtattactttgcttgtgttttcattcgaagttgtgaaaatttgaattgaaaggcaatttatcaggtggcctgtttctttatggatcttctatttcatttacag

upper sequence: AT5G12950.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G058739_T01 (Zea mays), 5'ss of exon 4
ATGATCTACATGCTCCCATTAGGTAAAGGTGTTTCTAAGGCTGTGACTTATCACGGTTGGGGAACACCTTATGATTCCTTCTGGTGTTGCTATGGCACTGgtaa--------actcttaaccacaattcat-ctggttttctac-atttttgtaagatacaaaagtaagataaattttgagggtctttttttgtttctgtccacag
||||| |||||||| ||    |     ||    || |||||||||| |||||| ||||||||||||   || ||||| ||||||||||| ||||| || |||||        ||    |||  | ||   | |||  ||  |   |||  | ||   || |  | |    |  |||||      || ||| |  |  | |      
ATGATTTACATGCTACCCCAGGCCCCTGGACACTCAAAGGCTGTGAGTTATCATGGTTGGGGAACAAAGTACGATTCATTCTGGTGTTGTTATGGGACAGgtaatataacacacctccaacatctatctgtgctgacttgatgtgattcctctacagta-attactgtacttgattttagtcaactgtttctcatattttg-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063712|gb|DR359469.1|DR359469
EST:     TCACGGTTGGGGAACACCTTATGATTCCTTCTGGTGTTGCTATGGCACTG                         GAATTGAATCCTTCTCAAAACTGGGAGATTCCATATATTTTCAAGAAGATG
genomic: TCACGGTTGGGGAACACCTTATGATTCCTTCTGGTGTTGCTATGGCACTGgtaaactctt ... ctgtccacagGAATTGAATCCTTCTCAAAACTGGGAGATTCCATATATTTTCAAGAAGATG
EST: gi|86063711|gb|DR359468.1|DR359468
EST:     TCACGGTTGGGGAACACCTTATGATTCCTTCTGGTGTTGCTATGGCACTG                         GAATTGAATCCTTCTCAAAACTGGGAGATTCCATATATTTTCAAGAAGATG
genomic: TCACGGTTGGGGAACACCTTATGATTCCTTCTGGTGTTGCTATGGCACTGgtaaactctt ... ctgtccacagGAATTGAATCCTTCTCAAAACTGGGAGATTCCATATATTTTCAAGAAGATG