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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAAATAATGTTGAGGTTACGGCATCCAAACGTTGTTCTTTTCATGGGAGCAGTTACTCGTCCCCCAAATTTCTCCATCCTGACAGAGTTCCTACCCAGgtttgatgatagtcccatattcttcttttttttttattcgtgaatgcaccacttcctctactagtttactttatagtcatcctttatacatgaagtaatccttttctaaccatgatatgcgtgtttttttgtttctaattttctttaatcattcttcttgagtttaatgggttaaacttttatgatatgatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G11850.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G11850.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv04s0008g01310.t01 (Vitis vinifera), 5'ss of exon 8
TTGAAATAATGTTGAGGTTACGGCATCCAAACGTTGTTCTTTTCATGGGAGCAGTTACTCGTCCCCCAAATTTCTCCATCCTGACAGAGTTCCTACCCAGgtttgatgatagtcccatattcttcttttttttttattcgtgaatgcaccacttcctctactagtttactttatagtcatcctttatacatgaagtaatccttttctaaccatgatatgcgtgtttttttgtttctaattttctttaatcattcttcttgagtttaatgggttaaacttttatgatatgatgcag
||||||| |||||||| ||  ||||||| || ||||||||||| |||||||| |||||||| ||||||||| |||| || || |||||||| || || ||||        || || || |||   |         ||| |   ||  |     |  |||  |  |      |||| | |   ||  |      |  | |     ||                                                                                         
TTGAAATCATGTTGAGATTGAGGCATCCTAATGTTGTTCTTTTTATGGGAGCTGTTACTCGCCCCCCAAATCTCTCTATACTCACAGAGTTTCTCCCAAGgtca------agacctattttcaattccaaaaggcattagaagatatatt-tgttatctgtttctaaggagtataattaaagttcttgttatcaaaagtttgcatcg----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164093175|gb|ES125802.1|ES125802
EST:     AAATTTCTCCATCCTGACAGAGTTCCTACCCAG                         GGGAAGTTTGTATAGATTACTCCATCGGCCGAACCATCAGCTTGATGAGAA
genomic: AAATTTCTCCATCCTGACAGAGTTCCTACCCAGgtttgatgat ... tatgatgcagGGGAAGTTTGTATAGATTACTCCATCGGCCGAACCATCAGCTTGATGAGAA