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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGATAGAAGGATGCTCCCACCGTTGGCATCAAGTCGGAAAAGGATGCCTCCACCTCCGTGTGTCAATTACTTCTGTCCCATGCATCTTTCTGAACGTgttagtttagcctgattgatattaagatactctactagttcttagttctgcattgctgttttcttggtcaaagtgtttcccaagctcactgtctgctacatcttaaattatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G10940.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10940.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA06G09930.1 (Glycine max), 5'ss of exon 7
ATACGATAGAAGGATGCTCCCACCGTTGGCATCAAGTCGGAAAAGGATGCCTCCACCTCCGTGTGTCAATTACTTCTGTCCCATGCATCTTTCTGAACGTgttagt--ttagcctgattgatattaagatactctactagttcttagt-tctgcattgctgttttcttggtcaaagtgtttcccaagctcactgtctgctacatcttaaattatttcag
||| |||||||||||||| || ||  |    ||| ||| |||||| ||| |||||||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||  || || | | ||||  || |||  || |||  ||   ||| | || ||||| |   | ||| ||||   |||    |||         || ||||  |             
ATATGATAGAAGGATGCTTCCGCCTCTTAGCTCATGTCAGAAAAGAATGTCTCCACCTCCTTGTGTTAATTATTTCTGTCCAATGCATCTTTCTGATCGTgtgagtccttcgctttactgat-ctatgattatcaact--ttggaagtgtttgaattgcagacat-ttgttcaatccgtt----aagtgttgaaaatgttacaagtcc-----------

upper sequence: AT5G10940.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA04G09890.3 (Glycine max), 5'ss of exon 8
ATACGATAGAAGGATGCTCCCACCGTTGGCATCAAGTCGGAAAAGGATGCCTCCACCTCCGTGTGTCAATTACTTCTGTCCCATGCATCTTTCTGAACGTgttagtt-tagcctgattgatattaagatactctactagttcttagt-tctgcattgctgttttcttggtcaaagtgtttcccaagctcactgtctgctacatcttaaattatttcag
||| |||||||||||||| || ||  |    ||| || ||||||| ||| |||||||||| ||||| ||||| |||||||| |||||||||||||| | ||| |||  | || | | ||||  || |||  || ||   ||   ||| | || ||||| ||  | ||| | ||    ||  |   | | |   | |  ||  || |            
ATATGATAGAAGGATGCTGCCGCCTCTTAGCTCATGTTGGAAAAGAATGTCTCCACCTCCTTGTGTTAATTATTTCTGTCCAATGCATCTTTCTGATCATgtgagtccttgctttactgat-ctatgattatcaac--attggaagtgtttgtattgcagtcat-ttgtttaatccatt--cagtgttgagaatgttataagtcct------------

upper sequence: AT5G10940.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv18s0001g07170.t01 (Vitis vinifera), 5'ss of exon 6
ATACGATAGAAGGATGCTCCCACCGTTGGCATCAAGTCGGAAAAGGATGCCTCCACCTCCGTGTGTCAATTACTTCTGTCCCATGCATCTTTCTGAACGTgttagtttagcctgattgatattaagatactctactagttcttagttctgcattgctgttttcttggtcaaagtgtttcccaagctcactgtctgctacatcttaaattatttcag
||| |||||||||||||| || ||  || ||||  |  |||||| |||| | |||||||| ||||| || || ||||| || |||||||||||||| | ||||||||| |    | |    ||   |    |||| |  || |   |   || | ||||     |  |   ||| |||       |   ||| |  |  |                
ATATGATAGAAGGATGCTGCCGCCACTGACATCCTGCGGGAAAACGATGACACCACCTCCTTGTGTTAACTATTTCTGCCCAATGCATCTTTCTGATCATgttagtttcgtaacactctactttttaattgctacaa--tcatttcttaacagtcctgtgcctattcttgtagtttttttttttttttttgtttattggaaa--------------