1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGCGAAGAACCAAGGTGCTGCAGAGGCTGACAGTTTGACTCACTGGGACATCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtccttattctttagtttgtgatacaattgtatattgttttacaatccttgccgcttattgctcactgcttgtaattttgtag
species | Arabidopsis thaliana |
transcript | AT5G10540.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAG GAAAAACTGCNACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTCEST: gi|116452131|gb|EG494723.1|EG494723
genomic: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtcc ... aattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
EST: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAG GAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTCEST: gi|116476839|gb|EG519431.1|EG519431
genomic: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtcc ... aattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
EST: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAG GAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTCEST: gi|124982464|gb|EL055272.1|EL055272
genomic: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtcc ... aattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
EST: TCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAG GAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTCEST: gi|86060877|gb|DR356634.1|DR356634
genomic: TCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtcc ... aattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
EST: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAG GAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTCEST: gi|116452116|gb|EG494708.1|EG494708
genomic: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtcc ... aattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
EST: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAG GAAGAACTGCGACCCTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
genomic: TCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtcc ... aattttgtagGAAGAACTGCGACCTTACTTCTCATTGCCAAAGGTTATGGATGCGTTATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGAAGAACCAAGGTGCTGCAGAGGCTGACAGTTTGACTCACTGGGACATCACTTTCTGGAGTGAGAGGCTTCGTGAATCCAAATACGATATTAATGAGgttctcgtccttattctttagtttgtgatacaattgtatattgttttacaatccttgccgcttattgctcactgcttgtaattttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG