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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTCTGATGAGTTCCGCAAGTCCAAGAGTATTATCCTTGTGACATCTGATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTCCTTAGTCGTACAGgtaaatcatgtagtagttttcaatcatggaattgaacagtatctacaaagttgattgtttttttttaccgaagttgttgttgtgtgtatgttgcttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G08620.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G08620.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os01g43130.1 (Oryza sativa), 5'ss of exon 8
AGTTTCTGATGAGTTCCGCAAGTCCAAGAGTATTATCCTTGTGACATCTGATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTCCTTAGTCGTACAGgtaaatcatgtagtagttttcaatcatggaattgaacagtatctacaaagttgattgtttttttttaccgaagttgttgttgtgtgtatgttgcttttgcag
 || || ||||| ||  | || || ||| || | ||  | ||||  ||||||||||||||||||||||||||||| ||||||||  || | ||| |||||||   ||   |  |    |   || |   || | |    | || |   | ||||   || |||     || ||                             
GGTCTCAGATGAATTTAGGAAATCAAAGGGTCTGATATTAGTGAGTTCTGATGTATCTGCTCGTGGTGTTGATTATCCTGATGTCACCCTTGTCATACAGgtgggtcgcatgattacatctcat-accaaaataattcatctccattta-ttgaaatttgtttgccctcgcag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124704506|gb|EH795908.1|EH795908
EST:     ATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTCCTTAGTCGTACAG                         ATGGGATTGCCATCAGACAGGGAACAAT
genomic: ATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTCCTTAGTCGTACAGgtaaatcatg ... gcttttgcagATGGGATTGCCATCAGACAGGGAACAAT