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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTCTGATGAGTTCCGCAAGTCCAAGGCTATTATCCTAGTCACATCTGATGTATCTGCTCGTGGTGTGGATTACCCTGATGTGTCATTGGTCGTACAGgtaaccatagttttctgacatggaattgttctgcgactacaaattttatctcttttgtttaactgaagttgtttgcttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G08610.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G08610.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os01g43130.1 (Oryza sativa), 5'ss of exon 8
AGTTTCTGATGAGTTCCGCAAGTCCAAGGCTATTATCCTAGTCACATCTGATGTATCTGCTCGTGGTGTGGATTACCCTGATGTGTCATTGGTCGTACAGgtaaccatagttttctgacatggaattgttctgcgactacaaattttatctcttttgtttaactgaagttgtttgcttttgcag
 || || ||||| ||  | || || |||| | | ||  |||| |  ||||||||||||||||||||||| ||||| ||||||||  |  | ||| |||||||             |  ||||      |       | | | | || |||||  ||  || |   || ||||||||  | ||||
GGTCTCAGATGAATTTAGGAAATCAAAGGGTCTGATATTAGTGAGTTCTGATGTATCTGCTCGTGGTGTTGATTATCCTGATGTCACCCTTGTCATACAGgtggg----------tcgcatgattacatctcataccaaaataattcatctccatttattga---aatttgtttgccctcgcag