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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCCGgtgagtttctgctatcattttgatattatattgggctgctttcttagatctgcttcattaatctttactgtatttataatgtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G05780.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164148049|gb|ES032853.1|ES032853
EST:     CAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCAG                         TGAAAACAAATGACATGATGCTCGTTATCTA
genomic: CAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCCGgtgagtttct ... taatgtgcagTGAAAACAAATGACATGATGCTCGTTATCTA
EST: gi|124977862|gb|EL051137.1|EL051137
EST:     CAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCCG                         TGAAAACAAATGACATGA
genomic: CAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCCGgtgagtttct ... taatgtgcagTGAAAACAAATGACATGA
EST: gi|86079670|gb|DR375427.1|DR375427
EST:     CAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCAG                         TGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCATCCGGA
genomic: CAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCCGgtgagtttct ... taatgtgcagTGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCATTCGGA
EST: gi|164036029|gb|ES113026.1|ES113026
EST:     AACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCAG                         TGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCAT
genomic: AACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCCGgtgagtttct ... taatgtgcagTGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCAT
EST: gi|124811088|gb|EH895954.1|EH895954
EST:     CAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCCG                         TGAAAACAAAATGACATGATGCTCGTTATCTATCTATCATCCCTCAT
genomic: CAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCCGgtgagtttct ... taatgtgcagTGAAAACAAA-TGACATGATGCTCGTTATCTATCTATCATCCCTCAT