1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAACGATATGGGATGTGGTTCAACAATAGGACCTATATTGGCTTCAGGAGTAGGGATCCGAACCGTTGATTGTGGCATAGCTCAGCTTTCTATGCATAGgtatgttaactactgccattccttagcaactctttctcatgtttccaaatcaaaatatgttagactcagcttctggtttttggaactcgttacttgtgagacag
species | Arabidopsis thaliana |
transcript | AT5G04710.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTAGGGATCCGAACCGTTGATTGTGGCATAGCTCAGCTTTCTATGCATAG TGTGAGAGAGATTTGTGGAACAGACGATATAGACATCGCGTACAGACATTTEST: gi|19799737|gb|AU231027.1|AU231027
genomic: GTAGGGATCCGAACCGTTGATTGTGGCATAGCTCAGCTTTCTATGCATAGgtatgttaac ... tgtgagacagTGTGAGAGAGATTTGTGGAACAGACGATATAGACATCGCGTACAGACATTT
EST: GCTCAGCTTTCTATGCATAG TGTGAGAGAGATTT-TTGAACAGACGATATAGACATCGCGTACAGACATTTEST: gi|86072735|gb|DR368492.1|DR368492
genomic: GCTCAGCTTTCTATGCATAGgtatgttaac ... tgtgagacagTGTGAGAGAGATTTGTGGAACAGACGATATAGACATCGCGTACAGACATTT
EST: GTAGGGATCCGAACCGTTGATTGTGGCATAGCTCAGCTTTCTATGCATAG TGTGAGAGAGATTTGTGGAACAGACGATATAGACATCGCGTACAGACATTT
genomic: GTAGGGATCCGAACCGTTGATTGTGGCATAGCTCAGCTTTCTATGCATAGgtatgttaac ... tgtgagacagTGTGAGAGAGATTTGTGGAACAGACGATATAGACATCGCGTACAGACATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACGATATGGGATGTGGTTCAACAATAGGACCTATATTGGCTTCAGGAGTAGGGATCCGAACCGTTGATTGTGGCATAGCTCAGCTTTCTATGCATAGgtatgttaactactgccattccttagcaactctttctcatgtttccaaatcaaaatatgttagactcagcttctggtttttggaactcgttacttgtgagacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT