Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACACAGCTGCCACACATTCTGATCGCTACCTCTTGATTTTTGGTGGTTGTTCTCATTCGATTTTCTACAGTGATCTTCATATCCTTGACTTGCAAACAgtaagtaagcacattttattggtattttttttgccaatttagtcatattctgatgaatttactttactcatggcag

Basic information

species Arabidopsis thaliana
transcript AT5G04420.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04420.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G33350.1 (Glycine max), 5'ss of exon 8
TCACACAGCTGCCACACATTCTGATCGCTACCTCTTGATTTTTGGTGGTTGTTCTCATTCGATTTTCTACAGTGATCTTCATATCCTTGACTTGCAAACAgtaagtaagcacattttattggtattttttttgccaatttagtcatatt------ctgatgaatttactttactcatggcag------------------
|||  | ||||| |  ||    || || |||||  | || ||||||||||| |||||||| || |||| || |||||||||| |  | ||| ||||||||||||||||  |   |||       |||| |||||   |||| | | |         | || |  ||  ||    |||                       
TCATTCCGCTGCTATTCAAGGAGAGCGGTACCTTCTAATATTTGGTGGTTGCTCTCATTCTATCTTCTTCAATGATCTTCATTTATTAGACATGCAAACAgtaagtaaatattatttcccatctttttctttgcatgtttaattaaaccaaagtattaataagcttgtttcttgcattctgaggcaatcagctatttctg