Sequence
atgc intronic sequence ATGC exonic sequenceAGAGCCCAAGATGCTAATGACCGGAAAATGGAACGAGTCCTTGAGTTATCAGCCATGTGATGCGGAAGGCGAACCTCTTCCAGGCACCGAACTGAAGGAGgttttatcaatttctctcctctaagcaaaccctctgcatactatatctagtcacctttctaattatgttacttccacag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G02100.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G02100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os03g16690.1 (Oryza sativa), 5'ss of exon 8
AGAGCCCAAGATGCTAATGACCGGAAAATGGAACGAGTCCTTGAGTTATCAGCCATGTGATGCGGAAGGCGAACCTCTTCCAGGCACCGAACTGAAGGAGgt------tttatcaatttctctcctctaagcaaaccctctgc-atactatatctagtcacctttctaattatgttacttccacag--------------------------------------
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AGAACCCAAAATAATGATAACTGGAAAGTGGAACCAGTCCATGAGTTGTCAGCCATGCGATCAAGAAGGCGATCCTCTTCCAGGAACTGAGCTAAAGGAGgtcagaatttcttcggatgtccattattacacagaacatttgttatataaaggcaaagctaattaatacttctataataactgtggatatcttctcaactcttcaacattatactttgtcccag
upper sequence: AT5G02100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 8
AGAGCCCAAGATGCTAATGACCGGAAAATGGAACGAGTCCTTGAGTTATCAGCCATGTGATGCGGAAGGCGAACCTCTTCCAGGCACCGAACTGAAGGAGgttttatcaatttctctcctctaagca-aaccctctgcatactatatctagt---cacctttctaattatgttacttccacag------------------------------------------------
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AGAACCCAAAATAATGATTACAGGGAAATGGAACAAGTCACTGAGCTGCCAACCATGTGACCAAGAAGGCGACCCTCTTCCAGGCACGGAGCTGAAGGAGgttggtcatacttccttccactttctgtaactacggataacctctgttttatacacacatgaatgaaaatgctggtcacatagttgccggacagctgatgtaccgaaccgctcgtacttaacttgctgcag
upper sequence: AT5G02100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G174644_T01 (Zea mays), 5'ss of exon 8
AGAGCCCAAGATGCTAATGACCGGAAAATGGAACGAGTCCTTGAGTTATCAGCCATGTGATGCGGAAGGCGAACCTCTTCCAGGCACCGAACTGAAGGAGgttttatcaatttctctcctcta--agcaaaccctctgcatactatatctagtcacctttctaattatgttacttccacag-----------------------------------------------
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AGAACCCAAAATCATGATTACAGGGAAGTGGAACAAGTCCCTGAGTTGCCAACCATGTGACCAAGAAGGCGATCCTCTTCCAGGCACGGAGCTGAAGGAGgtcgtactttctttcactttctgctactatggataacgtgtgttatatatatacccataagatgcaatggtggtcacatatttgcggatgactgatgcactgaactggtcatacttgattgactgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124963389|gb|EL037728.1|EL037728EST: TCTTCCAGGCACCGAACTGAAGGAG GTGTGGTAAGGTTGCTGAAGCTCCAAAGAACGATAAATACCAATACACACA
genomic: TCTTCCAGGCACCGAACTGAAGGAGgttttatcaa ... acttccacagGTGTGG-AAGGTTGCTGAAGCTCCAAAGAACGATAAATACCAATACACACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGCCCAAGATGCTAATGACCGGAAAATGGAACGAGTCCTTGAGTTATCAGCCATGTGATGCGGAAGGCGAACCTCTTCCAGGCACCGAACTGAAGGAGgttttatcaatttctctcctctaagcaaaccctctgcatactatatctagtcacctttctaattatgttacttccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG