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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCCGAAATTTCTTACTAGCTGAGAGGATAATGCGGTCCGGAAATTGTACCCCAATATCACATCCTATGCTACCTCCTACGCATCAGCATCATATGTGgtattggacgttatccctagtttgcattttgatgaattgtgtgtctgagctctttacctccgctaatagctgttttccag

Basic information

species Arabidopsis thaliana
transcript AT5G01770.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 7
TTTTCCGAAATTTCTTACTAGCTGAGAGGATAATGCGGTCCGGAAATTGTACCCCAATATCACATCCTATGCTACCTCCTACGCATCAGCATCATATGTGgtattggacg---ttatccctagtttgcat--tttgatgaattgtgtgtctgagctctttacctccgctaatagctgttttccag
| || || || |||||||| |||||||| || |||||||||| ||||||| ||||||| ||| | ||| || |||| || || |||||||| ||||||||||| | || |    || || |  |||  ||  |||    |  | | | ||     ||||||  | |   |||  |  ||||    
TCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCCAATTTCATACCCTTTGTTACCACCAACTCATCAGCACCATATGTGgtaattgatggcactagccattctttttatagtttagctacctct-tctccattttctttaatttcctaaatttcaattttag--

upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 8
TTTTCCGAAATTTCTTACTAGCTGAGAGGATAATGCGGTCCGGAAATTGTACCCCAATATCACATCCTATGCTACCTCCTACGCATCAGCATCATATGTGgtattggacgttatccctagtttgcattttgatgaattgtgtgtctgagctctttacctccgctaatagc-tgttttccag------
| || || || |||||||| |||||||| || |||||||||| ||||||| ||||||| ||| | ||| || | || || || |||||||| ||||||||||| | || |  |   ||||      |||| ||   ||   |  ||    |||  |  | |  ||||  | |   ||  |       
TCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCCAATTTCATACCCTTTGTTGCCACCAACTCATCAGCACCATATGTGgtaattgatggca---ctagccattctttttatagtttagctacctc--ttctgcattttctttaatttcctaaattttaattttag

upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 8
TTTTCCGAAATTTCTTACTAGCTGAGAGGATAATGCGGTCCGGAAATTGTACCCCAATATCACATCCTATGCTACCTCCTACGCATCAGCATCATATGTGgtatt---ggacgttatccctagtttgcattttgatgaattgtgtgtctgagctcttt-----acctccgctaatagctgttttccag
| || ||||||||  |||| |||||| | || ||||| || | ||||||| | ||  | || || || ||| ||||||| || ||||||||||||||||||||||   ||   ||||   ||   |   ||||    ||  ||||  |  |  | | |        |  | |  || | |   | |||
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtattgttggtgattattgttatgataatttttttctaaacgtgttgccaacttttgtcaacagtttatgtttttatccgcactgcag

upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 8
TTTTCCGAAATTTCTTACTAGCTGAGAGGATAATGCGGTCCGGAAATTGTACCCCAATATCACATCCTATGCTACCTCCTACGCATCAGCATCATATGTGgtat---tggacgttatccctagtttgcattttgatgaattgtgtgtctgagctcttta----cctccgctaatagctgttttccag
| || ||||||||  |||| |||||| | || ||||| || | ||||||| | ||  | || || || ||| ||||||| || |||||||||||||||||||||   |||   ||||   ||   |   ||||  | ||     ||||  |  |  | |      |  | |  || |||   | |||
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtattgttggtgattatttttatgatatttttttctaaacgtgttgtcaaattttgtcaacagtttatgtttttatctgcactgcag

upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 8
TTTTCCGAAATTTCTTACTAGCTGAGAGGATAATGCGGTCCGGAAATTGTACCCCAATATCACATCCTATGCTACCTCCTACGCATCAGCATCATATGTGgtattggacgttatccctagttt-gcattttgatgaattgtgtgtctgagctctttacctc------cgcta-atagctgttttccag
| || |||||||||||||| |||||||| || ||||| || | ||| ||| |||| || ||||| || ||| | || || || ||||||||||||||||||||      |  |   |||| |  | | |||  | || |||     | | |  |||  |||       || |   |  |||  |  ||
TGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCCTATTTCACACCCCATGTTGCCCCCAACTCATCAGCATCATATGTGgtacctactggaaatactagataagtaattttgttaagtgttcaa-taatccatttgtctcataatgtgccatgcatgtgtgctatag