1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AACTTGGCATTCTCGTCGGAAAAGGAGGACTTCATGGGAACGTTTTCAGGATAAAGCCACCAATGTGTTTCACTAAAGATGATGCAGgtaaattcttagtttatatatcgcttaaaattatgaagtttcaccaaagaacaaaacgagattgtataatatctataatgaatttgtgtgtgttgtaatgtatccacag
species | Arabidopsis thaliana |
transcript | AT4G39660.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAACGTTTTCAGGATAAAGCCACCAATGTGTTTCACTAAAGATGATGCAG ATTTCTTGGTAGATGCATTGGAEST: gi|164083351|gb|ES191118.1|ES191118
genomic: GAACGTTTTCAGGATAAAGCCACCAATGTGTTTCACTAAAGATGATGCAGgtaaattctt ... gtatccacagATTTCTTGGTAGATGCATTGGA
EST: TTCACTAAAGATGATGCAG TEST: gi|164083351|gb|ES191118.1|ES191118
genomic: TTCACTAAAGATGATGCAGgtaaattctt ... gtatccacag-
EST: TTCACTAAAGATGATGCAG TEST: gi|164222258|gb|EL992900.1|EL992900
genomic: TTCACTAAAGATGATGCAGgtaaattctt ... gtatccacag-
EST: TTCACTAAAGATGATGCAG ATTTCTTGGTAGATGCATTGGACTATTCCATCTCCAGGTTGTGAACAAGGA
genomic: TTCACTAAAGATGATGCAGgtaaattctt ... gtatccacagATTTCTTGGTAGATGCATTGGACTATTCCATCTCCAGGTTGTGAACAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTTGGCATTCTCGTCGGAAAAGGAGGACTTCATGGGAACGTTTTCAGGATAAAGCCACCAATGTGTTTCACTAAAGATGATGCAGgtaaattcttagtttatatatcgcttaaaattatgaagtttcaccaaagaacaaaacgagattgtataatatctataatgaatttgtgtgtgttgtaatgtatccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG