1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTGTGAAGCAAAGAATGCAGACCGGACAGTTTACATCAGCTCCCAGTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCAgttagtaacacttttatagctttttctttaagtctgcattcttttgttgaattttcatgtggtgacttatttcatttgcttctag
species | Arabidopsis thaliana |
transcript | AT4G39460.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCA GGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTCEST: gi|86037538|gb|DR333293.1|DR333293
genomic: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCAgttagtaaca ... ttgcttctagGGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTC
EST: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCA GGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTCEST: gi|86037548|gb|DR333303.1|DR333303
genomic: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCAgttagtaaca ... ttgcttctagGGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTC
EST: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCA GGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTCEST: gi|86037534|gb|DR333289.1|DR333289
genomic: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCAgttagtaaca ... ttgcttctagGGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTC
EST: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCN NNATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTCEST: gi|86082868|gb|DR378627.1|DR378627
genomic: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCAgttagtaaca ... ttgcttctagGGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTC
EST: GTGCTGTTCGAATGA-TGCATCAAAAGAGGGATTTAGGGGTCTCTATGCA GGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTCEST: gi|86037555|gb|DR333310.1|DR333310
genomic: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCAgttagtaaca ... ttgcttctagGGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTC
EST: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCA GGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTCEST: gi|86037540|gb|DR333295.1|DR333295
genomic: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCAgttagtaaca ... ttgcttctagGGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTC
EST: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCA GGATACCGGTCCTTCCTTTTGCGAGATT-GCCATTTGATGCTATACAGTTCEST: gi|164126585|gb|ES128966.1|ES128966
genomic: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCAgttagtaaca ... ttgcttctagGGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTC
EST: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCA GGATACCGGTCCTTTCCTTTTGCGAGATTTGCCATTTGEST: gi|124984808|gb|EL057439.1|EL057439
genomic: GTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCAgttagtaaca ... ttgcttctagGGATACCGGTCCTT-CCTTTTGCGAGATTTGCCATTTG
EST: CAAAAGAGGGATTTAGGGGTCTCTATGCA GGATACCGGCCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTC
genomic: CAAAAGAGGGATTTAGGGGTCTCTATGCAgttagtaaca ... ttgcttctagGGATACCGGTCCTTCCTTTTGCGAGATTTGCCATTTGATGCTATACAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTGAAGCAAAGAATGCAGACCGGACAGTTTACATCAGCTCCCAGTGCTGTTCGAATGATTGCATCAAAAGAGGGATTTAGGGGTCTCTATGCAgttagtaacacttttatagctttttctttaagtctgcattcttttgttgaattttcatgtggtgacttatttcatttgcttctag
- - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG