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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTTATGGAGCTTATGATGCTTACATTTCTGCAGCTACAAGATACGCAGCGCTTGGTGCCCCTACTTTGTATGATAATCCCGCCACGTTTTATGGAAgtaagacgactcactatataataccaacatactagaaacaaatgaatttcagctcattaagagaattctcactttgtcttag

Basic information

species Arabidopsis thaliana
transcript AT4G36960.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36960.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA01G39330.1 (Glycine max), 5'ss of exon 10
GGTGGTTATGGAGCTTATGATGCTTACATTTCTGCAGCTACAAGATACGCAGCGCTTGGTGCCCCTACTTTGTATGATAATCCCGCCACGTTTTATGGAAgtaagacgactcactatataataccaacatactagaaacaaatgaatttcagctcatta---agagaat-tctcactttgtc--ttag
|| || ||||| || ||  ||||||| ||||| ||||| || ||||| ||||| |||||||| ||||||||||||||  | || | | |  ||||||||||||||      ||  |   |  |       | || |   |  |   || || |  |||    || || |  |  | |||||   ||||
GGAGGATATGGCGCATACAATGCTTATATTTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAAgtaag------catcaagcaccagtgttcaattaaagtgacttatgttgcatcatattgactagtgactaccctattttgtgaattag

upper sequence: AT4G36960.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA11G05940.1 (Glycine max), 5'ss of exon 10
GGTGGTTATGGAGCTTATGATGCTTACATTTCTGCAGCTACAAGATACGCAGCGCTTGGTGCCCCTACTTTGTATGATAATCCCGCCACGTTTTATGGAAgtaag-acgactcacta-tataataccaacatactagaaacaaatgaatttcagctcattaagagaattctcactttgtc--ttag
|| || ||||| || ||  ||||||| || || ||||| || ||||| ||||| |||||||| ||||||||||||||  |||| | | |  |||||||||||||| |  |  ||| | | |   |  || ||    ||  ||  |   ||    || | ||        |  | |||||   ||||
GGAGGATATGGTGCATACAATGCTTATATCTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAgtaagcatcaagcaccagtgttcaattaaaat----gactcatgttgcttcatactgactagtgactaccctattttgtgaattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084158|gb|DR379917.1|DR379917
EST:     AGCGCTT-GTGCCCCTACTTTGTATGATAATCCCGCCACGTTTTATGGAA                         GAGGGGAACCAACCACAAGGGGAATAGGAAACAAGATCTTTGTTGGACGGC
genomic: AGCGCTTGGTGCCCCTACTTTGTATGATAATCCCGCCACGTTTTATGGAAgtaagacgac ... tttgtcttagGAGGGGAACCAACCACAAGGGGAATAGGAAACAAGATCTTTGTTGGACGGC