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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGACTCAACAAATGAAAGATATGCTTGATGCACGGAAACGCGGTGATCAATCTTTCCGCGAGAAAGATTTCAAAACAGCCATCGACTGTTACTCACAGgtcttgatttctggctacttcttcttacatttccgctcagtattagtatcggatttttggttatggttaaagccagatttgccaaaaaaattttgtttatctggatatagtagaactcatatggttacatacattgcttctgtggacag

Basic information

species Arabidopsis thaliana
transcript AT4G35230.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124712718|gb|EH804120.1|EH804120
EST:     CTTTCCGCGAGAAAGATTTCAAAACAGCCATCGACTGTTACTCACAG                         TTCATTGACGTTGGAACAATGGTATCTCCAACTGTATTTGGTCGGCGAAGT
genomic: CTTTCCGCGAGAAAGATTTCAAAACAGCCATCGACTGTTACTCACAGgtcttgattt ... ctgtggacagTTCATTGACGTTGGAACAATGGTATCTCCAACTGTATTTGGTCGGCGAAGT
EST: gi|124759582|gb|EH849712.1|EH849712
EST:     GATTTCAAAACAGCCATCGACTGTTACTCTACTAG                         TTCATTGACGTTGGAACAATGGTATCTCCAACTGTATTTGGTCGGCGAAG
genomic: GATTTCAAAACAGCCATCGACTGTTACTC-AC-AGgtcttgattt ... ctgtggacagTTCATTGACGTTGGAACAATGGTATCTCCAACTGTATTTGGTCGGCGAAG