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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATGGTTACCAATGCGTTGATGCATATTGAAGATTGCCTGAAATACATGGTTTCCTTGCGTGATCCTTCCATATTTCGGTTCTGTGCCATCCCTCAGgttagagaacgaaatatcacataattgttaagtctttaaacttcacattgagaactgtttatattgttttcctcttcatatggaattaggtattctcctctttaactacgtctgcactaatatagaatgccttagaagttaatattgctttgcttgggtgtattttcttgattag

Basic information

species Arabidopsis thaliana
transcript AT4G34640.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164194290|gb|ES042544.1|ES042544
EST:     TCCTTGCGTGATCCTTCCATATTTCGGTTCTGTGCCATCCCTCAG                         ATCATGGCGATTGGAACACTTGCATTATGCTATAACAATGAACAAGTA
genomic: TCCTTGCGTGATCCTTCCATATTTCGGTTCTGTGCCATCCCTCAGgttagagaac ... tcttgattagATCATGGCGATTGGAACACTTGCATTATGCTATAACAATGAACAAGTA
EST: gi|125122859|gb|EL169308.1|EL169308
EST:     TGGTTTCCTTGCGTGATCCTTCCATATTTCGGTTCTGTGCCATCCCTCAG                         ATCATGGCGATTGGAACACTTGCATTA
genomic: TGGTTTCCTTGCGTGATCCTTCCATATTTCGGTTCTGTGCCATCCCTCAGgttagagaac ... tcttgattagATCATGGCGATTGGAACACTTGCATTA