Sequence
atgc intronic sequence ATGC exonic sequenceACACTAATCTGTGGCCTACTTGGACTTCCTCCTTCGAATGGGGTCATTCCACAATCCCCTATGCACACAAAGAGTCTTGCAGTTCTTAAGAAGCAGgttagagaaaatcgaataatttttcccttagtttttacattgtttgaaatctgaaacgttttttgtatcaattgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G32510.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G32510.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA04G07390.1 (Glycine max), 5'ss of exon 8
ACACTAATCTGTGGCCTACTTGGACTTCCTCCTTCGAATGGGGTCATTCCACAATCCCCTATGCACACAAAGAGTCTTGCAGTTCTTAAGAAGCAGgttagagaaa--------atcgaataatttttcccttagttttt--acattgtttgaaatctgaaacgttttttg---tatcaattg-cag
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ACTTTGATTTGCGGGATCCTTGGCCTTCCTCCTTCAAATGGAGTCCTTCCACAGTCCCCCATGCATACAAAGAGTTTAGCAGTTCTTAGGAGGCGGgtaagtatcatctattgcatcaagtctattggttcttatttattagatatcaactaaatttagattcttgttttacgttatcaattttcag
upper sequence: AT4G32510.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA06G07480.1 (Glycine max), 5'ss of exon 9
ACACTAATCTGTGGCCTACTTGGACTTCCTCCTTCGAATGGGGTCATTCCACAATCCCCTATGCACACAAAGAGTCTTGCAGTTCTTAAGAAGCAGgttagagaaa---atcgaataatttttcccttagtttttacattgtttgaaatc---tgaaac--gttttttgtatca-attgcag--------
|| || || || || | ||||| ||||||||||| ||||| ||| ||||||| ||||| ||||| ||||||||| | ||||| |||| || || ||| | | || | || | | | ||| || | || || | ||| | || | || |||| | | || |
ACTCTGATTTGCGGGATCCTTGGCCTTCCTCCTTCCAATGGAGTCCTTCCACAGTCCCCCATGCATACAAAGAGTTTAGCAGTCCTTAGGAGGCGGgtaaatatcatctattgcatcaagactatcctaggttcttatttattaaatatcaactcaatttagattcttgttttacgttataaatttgcag
upper sequence: AT4G32510.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv04s0008g04980.t01 (Vitis vinifera), 5'ss of exon 8
ACACTAATCTGTGGCCTACTTGGACTTCCTCCTTCGAATGGGGTCATTCCACAATCCCCTATGCACACAAAGAGTCTTGCAGTTCTTAAGAAGCAGgttagagaaaatcgaata-atttttcccttagtttttacattgtttgaaatctgaaacgttttttgtatcaattgcag------------------------------
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ACTCTGCTTTGTGGGTTGCTTGGATTTCCTCCTTCAAATGGAGTCCTCCCACAATCCCCCATGCACACTAAGAGTCTTGCAGTCCTCAAGAAGCTGgt--gggatattctattctacctagaagataatttcctcttcactgatagtgctaactgtcaataacccagatttggattcttagacaacatgatttatactttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86059581|gb|DR355338.1|DR355338EST: TTCCACAATCCCCTATGCACACAAAGAGTCTTGCAGTTCTTAAGAAGCAG CAAATGAGAAAGAAAATGGTCCAGAAAGCAAAAGAATGCATGAGGGAAAAA
genomic: TTCCACAATCCCCTATGCACACAAAGAGTCTTGCAGTTCTTAAGAAGCAGgttagagaaa ... tcaattgcagCAAATGAGAAAGAAAATGGTCCAGAAAGCAAAAGAATGCATGAGGGAAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACACTAATCTGTGGCCTACTTGGACTTCCTCCTTCGAATGGGGTCATTCCACAATCCCCTATGCACACAAAGAGTCTTGCAGTTCTTAAGAAGCAGgttagagaaaatcgaataatttttcccttagtttttacattgtttgaaatctgaaacgttttttgtatcaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC