Sequence
atgc intronic sequence ATGC exonic sequenceAGCTGAGCTTAGGATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAACAGAGTTAAAGAAGgtacttctgctctatgctcaaacctgatctcacttaatattaagtactaatattcacgtttcttgtaaaaattttgttcacgtccaagaag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G32330.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G32330.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os02g10690.1 (Oryza sativa), 5'ss of exon 7
AGCTGAGCTTAGGATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAACAGAGTTAAAGAAGgtacttctgctctatg-ctcaaacctga---tctcacttaata-ttaagtactaatattca-cgtttcttgtaaaaattttgttcacgtccaagaag---
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AGCTGAACTCAAAATGCTTAGGAAGAGTTTGAACTTCAAGGCAACACCAATGCCCAGCTTCTACCAGGAACCAACTCCTCCAAAGGTGGAGTTGAAAAAGgtattcagagaccacaactcaaggctagcattcttcctttttacttcagatctaagagtgagcaagcgttggacagtttgcaacaacctactagagctct
upper sequence: AT4G32330.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv04s0008g05480.t01 (Vitis vinifera), 5'ss of exon 8
AGCTGAGCTTAGGATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAACAGAGTTAAAGAAGgtacttctgctctatgctcaaacctgatctcacttaatattaa-gtactaatattcacgtttcttgtaaaaattttgttcacgtccaagaag--------
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AGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAAGCAACGCCCATGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAGgtatattttatttcttatgttgtttgatttcaggcaaaatgaatgttatcatttgttcatgacattaaagaatttacttcatagcaagtatctaaattggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125042846|gb|EL115115.1|EL115115EST: CAAGAACCTCAGCCGCCTAAAACAGAGTTAAAGAAG ATACCACCAACGAGACCAAAATCTCCAAAACTCGGGCGAAAGAAGACTGCT
genomic: CAAGAACCTCAGCCGCCTAAAACAGAGTTAAAGAAGgtacttctgc ... gtccaagaagATACCACCAACGAGACCAAAATCTCCAAAACTCGGGCGAAAGAAGACTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTGAGCTTAGGATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAACAGAGTTAAAGAAGgtacttctgctctatgctcaaacctgatctcacttaatattaagtactaatattcacgtttcttgtaaaaattttgttcacgtccaagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG