1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAATATCTTCAATGATGCCAAAGTTCCGTGGTCCGAATACCGCTACTATGATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAGgtttgtttgtcctagaaggctatgttttagttgacattgctttatatatgcatcaacaaacaggatatcatttatgtgatgccaaagtgagtatttgttt...
species | Arabidopsis thaliana |
transcript | AT4G31990.4 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAG GAAGCTCCAGAAGGATCCTTCATCTTGCTTCACGGEST: gi|47828582|gb|CK118266.1|CK118266
genomic: ATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAGgtttgtttgt ... aaatgtacagGAAGCTCCAGAAGGATCCTTCATCTTGCTTCACGG
EST: ATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAG GAAGCTCCAGAAGGATCCTTCATCTTGCTTCACGGATGTGCTCACAACCCAEST: gi|124860684|gb|EH945121.1|EH945121
genomic: ATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAGgtttgtttgt ... aaatgtacagGAAGCTCCAGAAGGATCCTTCATCTTGCTTCACGGATGTGCTCACAACCCA
EST: TACCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAG GAAGCTCCAGAAGGATEST: gi|124979050|gb|EL052150.1|EL052150
genomic: T-CCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAGgtttgtttgt ... aaatgtacagGAAGCTCCAGAAGGAT
EST: AGCAGATAATAAAG GAAGCTCCAGAAGGATCCTTCATCTTGCTTCACGGATGTGCTCACAACCCEST: gi|124917880|gb|EH991754.1|EH991754
genomic: AGCAGAT-ATAAAGgtttgtttgt ... aaatgtacagGAAGCTCCAGAAGGATCCTTCATCTTGCTTCACGGATGTGCTCACAACCC
EST: ATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAG GAAGCTCCAGAAGGEST: gi|125166187|gb|EL192105.1|EL192105
genomic: ATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAGgtttgtttgt ... aaatgtacagGAAGCTCCAGAAGG
EST: ATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAG GAAGCTCCAGAAGGATCCTTCATCTTGCTTCACGGATGTG
genomic: ATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAGgtttgtttgt ... aaatgtacagGAAGCTCCAGAAGGATCCTTCATCTTGCTTCACGGATGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATATCTTCAATGATGCCAAAGTTCCGTGGTCCGAATACCGCTACTATGATCCAAAAACAATTGGTTTGGATTTTGAGGGAATGATAGCAGATATAAAGgtttgtttgtcctagaaggctatgttttagttgacattgctttatatatgcatcaacaaacaggatatcatttatgtgatgccaaagtgagtatttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT