Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAAAAGTTGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATCTAACGAGgtaggaagtgtcatttgatttctaaacttccctgttaaacttcctctttttaacattcccaatcctcggactcaaaaactgatctctgttcaaatctttatttcag

Basic information

species Arabidopsis thaliana
transcript AT4G31750.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os06g48300.1 (Oryza sativa), 5'ss of exon 7
GAGGAAAAAGTTGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATCTAACGAGgtaggaagtgtcatttgatttct--aaacttccctgttaaacttcctctttttaacattcccaatcctcggactcaaaaactgatctctgt-tcaaatctttatttcag
|||||    || || |||||||||||||| ||||| ||||| |||||||| ||||||||||| ||  | |||||||||   | |    ||| ||||||  |||  |||    | || | | | ||| | | | ||  |||| |   | |      |  |||||| | | ||||   |       
GAGGAGGTGGTCGACAGCTCTCTCGAGTTCCTCATCCTTGCTAGTGATGGCCTCTGGGACGTGGTGACCAACGAGgtacacactaat-tttaatttctccaaatctcctctctgaaatgcatgtttctga-actctgaatcattttaatttctc-caaatctctttctgaaatgcatg------

upper sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os04g56450.2 (Oryza sativa), 5'ss of exon 7
GAGGAAAAAGTTGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATCTAACGAGgtaggaagtgtcatttgatttctaaacttccctgttaaacttcctctttttaacattcccaatcctcggactcaaaaactgatctctgttcaaatctttatttcag---
||||||    |||||  |||||||||||| |||||||||||||||||||| || ||||| || ||| | || ||||||         |||  |     ||| |     |  ||  ||  | | | |   | ||  | |||| |  ||  |    |   | |  ||   || |    ||  |   
GAGGAAGTTATTGATCACTCTCTCGAGTTCCTCATTCTTGCAAGTGATGGGCTGTGGGATGTAGTAACCAATGAGgtaa--------attcaag----aaaatgaaaagagaagatttttatgtatcttaatcgtattccttgtgcttgatg--tagcccccttttgcatttgctcttatgcag

upper sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G056572_T03 (Zea mays), 5'ss of exon 7
GAGGAAAAAGTTGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATCTAACGAGg-----taggaagtgtca--tttgatttctaaacttccctgttaa--acttcctctttttaacattcccaat-cctcggactcaaaaactg---atctctgttcaaatctttat--ttcag
   |||   ||||||  | | ||||||||||| || |||||||||||||| || ||||| || || ||||||||||     |||||| ||        ||  || | | |    ||       ||| ||    | |   | |  | | |||  |   ||     ||   || |   ||  ||| |||    | |||
---GAAGTTGTTGATGACACACTCGAGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttaggaaatgcggagccggagctccagaatattttgccggtcgcttgctgcactcattgtgcttagtgccttagtaccacctgttggcaatgttctttacaatgtttgccatgcag

upper sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G056572_T02 (Zea mays), 5'ss of exon 7
GAGGAAAAAGTTGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATCTAACGAGgta-----ggaagtgtc--atttgatttctaaacttccctgttaa--acttcctctttttaacattcccaat-cctcggactcaaaaactg---atctctgttcaaatctttat--ttcag
||||||   ||||||  | | ||||||||||| || |||||||||||||| || ||||| || || ||||||||||||     |||| ||        ||  || | | |    ||       ||| ||    | |   | |  | | |||  |   ||     ||   || |   ||  ||| |||    | |||
GAGGAAGTTGTTGATGACACACTCGAGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttaggaaatgcggagccggagctccagaatattttgccggtcgcttgctgcactcattgtgcttagtgccttagtaccacctgttggcaatgttctttacaatgtttgccatgcag

upper sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA04G06250.1 (Glycine max), 5'ss of exon 8
GAGGAAAAAGTTGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATCTAACGAGgtaggaagtgtcatttgatttctaaacttccctgttaaacttcctctttttaacattc-ccaatcctcggactcaaaaactgatctctgttcaaatctttatttcag
|| ||||||||||| ||||| || |||||||| ||||| || ||||| || || ||||| ||||| ||||| |||||  | | ||   ||   ||  |    ||      ||||   | ||||  | | |  | | ||   | |||    ||||  || |       | ||    |      
GAAGAAAAAGTTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactgatgttcatttcttctcattgatgactaaaacgcatcttcatcataaccactaaaagtaggagc--aaaatggagcaaaaaggatataaaaac-----

upper sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
GAGGAAAAAGTTGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATCTAACGAGgtaggaagtgtcatttg-atttctaaacttccctgttaaacttcctctttttaacattcccaatcctcggactcaaaaactgatctctgttcaa---atctttattt--cag
||||||||  |||| ||||| ||||||||||| || ||||| |||||||| || ||||| |||||  | || |||||  |   | || |    ||||||  | | |||  ||  |       |  |  | |||| ||  |  |    ||| |  ||      |    ||    ||   ||||  |||
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttcttta-tgcccatttgtatggtagatggtggatattcacacacaaccc-ttcacagtcttcctcatagctaatacgtcaccatttatcag