1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGCTCCACTAGGAGGGGACCAAGCAGCAGCTGAACTACCTGGAGACTGGGTTTCAGCTGGAAAAAGCGCCCAGTGGCTCTGGTATTCTGTTTATGCCAGgtaaacgctgagaaactcttttattcattatagtaaatgcacagaatttgaaacatgaaacatgaatgatgcag
species | Arabidopsis thaliana |
transcript | AT4G28220.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTTTCAGCTGGAAAAAGCGCCCAGTGGCTCTGGTATTCTATTTATGCCAG CAAGCAAGTTAGCTGGCGAACGAGGGCTCTGGTGGTGTCGGACTGGACAAGEST: gi|19743033|gb|AU228386.1|AU228386
genomic: GTTTCAGCTGGAAAAAGCGCCCAGTGGCTCTGGTATTCTGTTTATGCCAGgtaaacgctg ... aatgatgcagCAAGCAAGTTAGCTGGCGAACGAGGGCTCTGGTGGTGTCGGACTGGACAAG
EST: GTTTCAGCTGGAAAAAGCGCCCATTGGCTCTGGTATTCTGTTTATGCCAG CAAGCAAGTTAGCTGGCGAACGAGGGCTCTGGTGGTGTCGGACTGGACAAG
genomic: GTTTCAGCTGGAAAAAGCGCCCAGTGGCTCTGGTATTCTGTTTATGCCAGgtaaacgctg ... aatgatgcagCAAGCAAGTTAGCTGGCGAACGAGGGCTCTGGTGGTGTCGGACTGGACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTCCACTAGGAGGGGACCAAGCAGCAGCTGAACTACCTGGAGACTGGGTTTCAGCTGGAAAAAGCGCCCAGTGGCTCTGGTATTCTGTTTATGCCAGgtaaacgctgagaaactcttttattcattatagtaaatgcacagaatttgaaacatgaaacatgaatgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA