1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAATGCATCAACAGGATCGCCTCTTTGGAGAGCATTGgtatttttctctctatccaattataaaaagagcatttgtctcatctggcagtctgtaatttgcgatgggtatagtaaacccgaagcaataggaataagcaggtgagacactgatgtgaaacaatgatgggacgcttaagaactgaacccattctcttttgttcag
species | Arabidopsis thaliana |
transcript | AT4G27120.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GMATGCATCWACAGGATCGCCTCTTTGGMGAGCATTG GGCGGCTCTCGGGGGTCATGGATGMTAGAGGGAAATACATTTACATATCAWEST: gi|124812142|gb|EH897008.1|EH897008
genomic: GAATGCATCAACAGGATCGCCTCTTTGGAGAGCATTGgtatttttct ... ttttgttcagGGCGGCTCTCGGGGGTCATGGATGATAGAGGGAAATACATTTACATATCAA
EST: CCTCTTTGGAGAGCATTG GGCGGCTCTCGGGGGTCATGGATGATAGAGGGAAATACATTTACATATCAAEST: gi|86083458|gb|DR379217.1|DR379217
genomic: CCTCTTTGGAGAGCATTGgtatttttct ... ttttgttcagGGCGGCTCTCGGGGGTCATGGATGATAGAGGGAAATACATTTACATATCAA
EST: GAATGCATCAACAGGATCGCCTCTTTGGAGAGCATTG GGCGGCTCTCGGGGNTCATGGATGATAGAGGGAAATACATTTACATATCAA
genomic: GAATGCATCAACAGGATCGCCTCTTTGGAGAGCATTGgtatttttct ... ttttgttcagGGCGGCTCTCGGGGGTCATGGATGATAGAGGGAAATACATTTACATATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGCATCAACAGGATCGCCTCTTTGGAGAGCATTGgtatttttctctctatccaattataaaaagagcatttgtctcatctggcagtctgtaatttgcgatgggtatagtaaacccgaagcaataggaataagcaggtgagacactgatgtgaaacaatgatgggacgcttaagaactgaacccattctcttttgttcag
- - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - AGAGCA