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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACCTGTTCTTGCTCAGAAgtaagttgttcaccttccttcaagagaccactcctcatttttaatgtttgtctcactttcatctctctctgaaatttccaattttagaggagtgagatatcatgaacccgaatactggaaatttggagaagagggtaacaaatacttccgccatgccacag

Basic information

species Arabidopsis thaliana
transcript AT4G26940.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26940.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os03g38050.1 (Oryza sativa), 5'ss of exon 8
CCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACCTGTTCTTGCTCAGAAgtaagttgttcaccttccttcaagagaccactcctcatttttaatgtttgtctcactttcatctctctctgaaatttccaattttagaggagtgagatatcatgaacccgaatactggaaatttggagaagagggtaacaaatacttccgccatgccacag
| || |||||      ||| || |   | |||  |||||| ||||  ||||||||||||||||||||||| || || || ||||||||||||||    ||  ||  |   |       ||     |||| ||    || |  | |  ||  |   | |  | | ||                                                                                   
CAACTCTTGGTAACATATTGGCTAAGCATCGGTCGAAGCCTCGAGCTTACATTGGTTGCATGAAATCTGGTCCAGTCCTGGCTCAGAAgtaagtc--ccatgttgttgtcatgtcttccttgatgttttaaacagctgaccaaataccaatttgttttttattctcag---------------------------------------------------------------------------------

upper sequence: AT4G26940.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os02g06840.2 (Oryza sativa), 5'ss of exon 9
CCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACCTGTTCTTGCTCAGAAgtaagttgttcaccttccttcaagagaccactcctcatttttaatgtttgtctcactttcatct--ctctctgaaatttccaattttagaggagtgagatatcatgaacccgaatactggaaatttggagaagagggtaacaaatacttccgccatgccacag
| || ||||||      ||| | |   |     |||||||| |||| || ||||| |||||||||||||||||||| ||  || ||||||||||   |||| |   || ||  |     | ||   |   ||||| |   |  ||||  ||   | |||  || || | || ||| |   |      | ||  |                                                         
CAACACTTGGACAGATTTTATCTAATCATGCATTGAAGCCCAGAGTATATATTGGATGCATGAAATCTGGACCTGTCCTAACTGAGAAgtaagtgcatcacatggttttaactg-----ttctttctgacaatgtctcctttccttttctcatgccctcaaaatttgctaagttttgttaacccttgtctccag---------------------------------------------------------

upper sequence: AT4G26940.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G132866_T02 (Zea mays), 5'ss of exon 7
CCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACCTGTTCTTGCTCAGAAgtaagttgttcaccttccttcaagagaccactcctcatttttaatgtttgtctcactttcatctctctctgaaatttccaattttagaggagtgagatatcatgaacccgaatactggaaatttggagaagagggtaacaaatacttccgccatgccacag
| ||||| |||       |  | | | |     |||||||  |||||||||| || ||||||||||||||||||||  |  |  | ||||||| |    | |||      |||| |||   |||    || | | | ||   | |||         |||||| ||    |   | | |  || | |  | |  || | |                                                  
CAACGCTCGGACAGATTCTGTCGAAACATGCATTGAAGCCGAGAGTGTACATCGGATGCATGAAATCTGGACCTGTCTTATCCGAAAAgtaagct---tatcttgtgggcagagtccaggtctc----ttgaggatagt---aattttg-------ctgaaagttgt--tgacacatgtttgtgcttccctccactccag-------------------------------------------------

upper sequence: AT4G26940.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv19s0090g00560.t01 (Vitis vinifera), 5'ss of exon 8
CCACGCTTGGAGCAGAATTAGCAAGATACCGGATGAAGCCCCGAGTGTACATTGGTTGCATGAAATCTGGACCTGTTCTTGCTCAGAAgtaagttgttcaccttccttcaagagaccactcctcatttttaatgtttgtctcactttcatctctctctgaaatttccaattttagaggagtgagatatcatgaacccgaatactggaaatttggagaagagggtaacaaatacttccgccatgccacag
| || || ||||||   ||||| ||  ||||    || ||  |  | |||||||| ||||||||||||||||||||||| ||||| |||||||     ||| ||| |  ||     ||    |||    ||   ||      | | | |  | | ||||   ||||    ||  ||  ||                                                                     
CAACACTGGGAGCAACTTTAGCGAGGCACCGTTCAAAACCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAAgtaaga----cacattcttataattcttcatctttcaga--tagatttcaagagattctaaaatgtttctg---tttctcccttatgaacag---------------------------------------------------------------------