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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTATTGACTTAATTGTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTCTACGTTATACACTCGACATTTCAGgtaattgatatatcaatctcatctacatacgagtaacattctcttaactaccaaacaagatccagaaaattgatttctcttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G26510.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 8
AGCTATTGACTTAATTGTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTCTACGTTATACACTCGACATTTCAGgtaattgatatat--------------caatctcatct-acatacgagtaa----cattctcttaactaccaaacaagatccagaaaattgatttctcttgcag---------------------------------------------------
 || ||||||||||| || || |||||| |||| ||||| ||||||||||||||||||||| || | || ||| | || || || ||  | || | |||||||  |||| ||               || |||  ||| | ||| ||  ||    |  ||| || |    |  | || ||  |    | |     || || |||                                                   
TGCGATTGACTTAATCGTTCAGCATATTCGCACTAAGCTTGGTCAACATGATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacctgatgtaaccataaatgttctgcagtcttttcttatataagaacaattgtctgtcttttgatagtctcataatattgaatgtaatatgcactttttcaggatttttgtaacatatataaatattgacattgcaatgctgctttctttcag

upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 5'ss of exon 8
AGCTATTGACTTAATTGTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTCTACGTTATACACTCGACATTTCAGgtaattgatatatcaat-------------ctcatctacatacgagtaacattctcttaactaccaaacaagatccaga---aaattgatttctcttgcag------------------------------------------------
 || ||||||||||| || || |||||| | || ||||| ||||||||||||||||||||| || | || ||| | || || || ||  | || | ||||||| || || |  | ||              |  |    |||  |   |   | | || |  | |  | || ||  |     ||    |||  |  || |                                                 
TGCAATTGACTTAATAGTTCAGCATATTCGTACTAAGCTTGGTCAACATGATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacttcatgtgaccataaatgtgctgcagttttttcttataaaaccgattgttttttgataatctcataatattgaatgttaatgcaattatttctggatttttgtagcgtatataaatattagcatttcaattcttctttctttcag

upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 6
AGCTATTGACTTAATTGTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTCTACGTTATACACTCGACATTTCAGgtaattgatatat-caatctcatctacatacgagtaacattctcttaactaccaaacaagatccagaaaatt-gatttctcttgcag----------------------------------------
 |||||||| || ||||| ||||||||| |||| ||||| ||||| |||||  | |||||||||||||||||| | || || || || || || |||||||||     |   |   || |    |   ||  | | |     ||||  |    || |  || |    ||||| ||||| | ||                                            
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACTTGTGTAAAATATATCCTAATTTATATGTCATTCAGTCTACTTTTCAGgtacccctttcttgttatttatggtctttatcaatcatcccatcttccccgttaatctggaacttccaaattcgatttttttttttttattaaaagttgaatcatcacgataattgcttcgatgcag

upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 8
AGCTATTGACTTAATTGTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTCTACGTTATACACTCGACATTTCAGgtaat---tgatatatcaatctcatctac-atacgagtaacattctcttaactaccaaacaagatccagaaaattgatttctcttgcag----------------
 || ||||| || ||||| || |||||| |||| ||||| ||||| ||||| || |||||||||||||||||| | || || || || || || |||||||||       || |||  | ||  || |  ||   | | | |  |||  ||||    |    | ||   ||| || |    |||||                   
-GCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgcaatttatggaccttttcaattatctcactgagaa-ctccaaacttttgattttg-tcataaaagttaagccatcttgataattgctactatgcaga

upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G47270.1 (Glycine max), 5'ss of exon 8
AGCTATTGACTTAATTGTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTCTACGTTATACACTCGACATTTCAGgtaattgatatatcaatctcatctacat-acgagtaacattctcttaacta--ccaaacaagatccagaaaattgatttctcttgcag---------------------------------------
 |||||||| || ||||| ||||||||| |||| ||||| ||||| |||||  | ||||||||||||| |||  | || || || || || || |||||||||     |   |     | ||  || | |  | | |     ||||  |     ||      |     ||| |  |||| | ||                                           
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACATGTGTAAAATATATCGTAACTTATATGTCATTCAGTCTACTTTTCAGgtacccctttcttgttatttattgactttatcaatgatcccatcttcccccgttcagctggaacttccaaattcaattttttttatttattaaaagttgaatcatcacgataattgcttcgatgtag

upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 8
AGCTATTGACTTAATTGTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTCTACGTTATACACTCGACATTTCAGgtaatt---gatatatcaatctcatctac-atacgagtaacattctcttaactaccaaacaagatccagaaaattgatttctcttg-cag--------------
 || ||||| || ||||| || |||||  |||| ||||| ||||| ||||| || |||||||||||||||||| | || || || || || || |||||||||       || |||    ||  || |  ||   | | | |  |||  ||||    |    | ||   | | || |    |||||  ||              
GGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGgtaccctgcaatttatgggccttttcaattatctcacttagaa-ctccaaacttttgattttg-tcattacagttaaaccatcttgatagttgctactatgcag

upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 8
AGCTATTGACTTAATTGTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTCTACGTTATACACTCGACATTTCAGgta-attg---------atatatcaatctcatctacatacgagtaacattctcttaactaccaaacaagatccagaaaattgatttctcttgcag---------------------------------------------------------------------------------------------------------
||| ||||| || ||||||||||||||| | || || || || ||||||||||| |||||||||||||||||||| || || || || || || ||||||||| ||           || |   | | | || ||| |  | ||    |   | |   |           |    ||| |  |  | || ||                                                                                                            
AGCCATTGATTTGATTGTGCAACATATTCGTACAAAACTTGGACAACATGATCTTTGTAAAATATATCCTAATCTTTATGTCATTCAATCAACTTTTCAGgtatatcagctcttcctatttgctattattatttac-tgtgggtg-tgtgtgcctgtgtgtgtgcgtgtgtttttaaattccaaatttcatgtcattgtaaatgtaaggtcacatgatcttgtggattcgatattcagttttatttgcctattgaagttccaaatttcatatgattgaagctttatttgatttgatccag