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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGTTGATGAATTTCAAGACACTAGCACAATGCAGTACAAGCTTTTACGAATGCTAGGCTCTCATAATCACATAACTATTGTTGGTGATGATGATCAGgtgcgtttttttccacacaaaaattacctaatttcagttgaatattcgaagtaagtatgatgtatattttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G25120.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25120.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G34060.1 (Glycine max), 5'ss of exon 8
CATAGTTGATGAATTTCAAGACACTAGCACAATGCAGTACAAGCTTTTACGAATGCTAGGCTCTCATAATCACATAACTATTGTTGGTGATGATGATCAGgtgcg-----tttttttcca--cacaaaaattacctaatttca--gttgaatattcgaagtaagtatga-tgtatattttcttgcag---------------------------------------------
  |  | ||||| || ||||| |||||  | ||||| |||||| || ||   ||||| |  |||||| || | ||||| |||||||||||||||||||||||  |     ||| ||   |  | |  || ||   ||| |  |  |||| |||||   | |   |||   | | | |   |||  |                                              
TGTTATAGATGAGTTCCAAGATACTAGTGCCATGCAATACAAGTTTCTAAAGATGCTTGCATCTCATCATAAAATAACAATTGTTGGTGATGATGATCAGgtatgaatattttcttcttaacctctgaagtttgataagtctatggttggatatttatattgtttatttctctctctgcacttaaaagatcatccttgtaaccattggtctaatgtcttatttttcttacag

upper sequence: AT4G25120.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv16s0013g00300.t01 (Vitis vinifera), 5'ss of exon 8
CATAGTTGATGAATTTCAAGACACTAGCACAATGCAGTACAAGCTTTTACGAATGCTAGGCTCTCATAATCACATAACTATTGTTGGTGATGATGATCAGgtgcgtttttttccacacaaaaattacctaatttcagttgaatattcgaagtaagtatgatgtatattttcttgcag-------------------------
  || | ||||| ||||| ||||| ||  | ||||| |||   ||| | || || || |  || ||||| | ||||||||||||||||||||| ||||||||||  |   ||   |  ||   ||||||        ||  |  ||     |   | | || | | || | |  |                           
TGTAATAGATGAGTTTCAGGACACAAGTGCCATGCAATACTGTCTTCTTCGTATTCTTGCTTCGCATAACCGCATAACTATTGTTGGTGATGAGGATCAGgtgctctacatttggc--aacctttacctggaggaccttacaccttttctttcttttttattttttttatttcacttttcattgattaaattctgtttacat