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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACAGTTTGTCCCAAGCATATGGCCAAATGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTGGTAAAGGTTCAGAGgcaagtcatcttttgtttgtagttattctttagtagtttcttaattgacttactgtggtcttttgatacgttttagtaccgtctatatattttgagttgtaatctttgtttcccgtcatcag

Basic information

species Arabidopsis thaliana
transcript AT4G24810.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G24810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA17G13650.1 (Glycine max), 5'ss of exon 8
ACACAGTTTGTCCCAAGCATATGGCCAAATGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTGGTAAAGGTTCAGAGgcaagtcatcttttgtttgtagttattctttagtagtttcttaattgacttactgtggtcttttgatacgttttagtaccgtctatatattttgagttgtaatctttgtttcccgtcatcag
    || ||| | | ||||||||| ||||||||  |||| ||||| ||||| ||||| ||||| ||||| || |||||| ||||| ||||||| ||||||||||||||||       | || || || | || ||  | ||||| ||  ||| | |  ||| | |                                                         
----AGCTTGACTCTAGCATATGGTCAAATGATTTTGAAAAGTGGATTCTTCCATGCAGATCCTCATCCAGGAAATATCCTGATTTGTAAAGGATCAGAGGCAAgtcatc----agctatatttgttttctaatatctccttaactg--ttatt-tcatctctag---------------------------------------------------------

upper sequence: AT4G24810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA05G02990.1 (Glycine max), 5'ss of exon 8
ACACAGTTTGTCCCAAGCATATGGCCAAATGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTGGTAAAGGTTCAGAGgcaagtcatcttttgtttgtagttattctttagtagtttcttaattgacttactgtggtcttttgatacgttttagtaccgtctatatattttgagttgtaatctttgtttcccgtcatcag
    || ||| | | ||||||||| ||||||||  |||| ||||| ||||| ||||| ||||| ||||| || |||||| ||||| ||||||| ||||||||||||||||       | || || || | || ||  |   ||| ||  ||| | |  |||   | |  || |  |||| |                                         
----AGCTTGACTCTAGCATATGGTCAAATGATTTTGAAAAGTGGATTCTTCCATGCAGATCCTCATCCAGGAAATATCCTGATTTGTAAAGGATCAGAGGCAAgtcatc----agctatatttgttttctaatatctctctaactg--ttatt-tcatctccaggttagtatc-gtacag-----------------------------------------

upper sequence: AT4G24810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv17s0000g10260.t01 (Vitis vinifera), 5'ss of exon 8
ACACAGTTTGTCCCAAGCATATGGCCAAATGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTGGTAAAGGTTCAGAGgcaagt---catcttttgtttgtagttattctttagtagtttcttaattga-cttactgtggtcttttgatacgttttagtaccgtctatatattttgagt-tgtaatct---ttgtttcccgtcatcag
                          ||||||||||||||||||||||||| ||||| ||||| |||||||| |||||  ||||  | ||||||||||||||||||   ||   |    ||||  || || ||||    ||| |    ||| |||| | | ||    | || | ||||| |   ||  ||   |    ||| |||| |||   |||||||| || ||   
--------------------------AAATGATACTGAAGAGTGGTTTCTTCCATGCAGATCCCCATCCTGGAAATATTCTGATCTGCAAAGGTTCAGAGGCAAGTGGGCAATATAAACTTGTT-TTgttttttacctttttttcccctgatcttaatcttgttacataatcc-ttttactcgtgttcatgattgcctagtctgtactctcatttgtttccagttatt--