1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTCTTGGCTGGAGTTATCCGTGTGATGTTTGGAGCGTTGGATGTATCATAGTGGAGTTGTGCACGgtgtgtgtctgaagtagttgattgttaatgaatgtttgggagtcttttattgaaagatttgagatttgtag
species | Arabidopsis thaliana |
transcript | AT4G24740.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCCGTGTGATGTTTGGAGCGTTGGATGTATCATAGTGGAGTTGTGCACG GGTGAAGCATTGTTCCAAAACACATGAAAACCTGGAGCATCTAGEST: gi|125242008|gb|EL256093.1|EL256093
genomic: ATCCGTGTGATGTTTGGAGCGTTGGATGTATCATAGTGGAGTTGTGCACGgtgtgtgtct ... agatttgtagGGTGAAGCATTGTTCCAAA-CACATGAAAACCTGGAGCATCTAG
EST: ATGTATCATAGTGGAGTTGTGCACG GGTGAAGCATTGTTCCAAACACATGAAAACCTGGAGCATCTAGCGATGATGEST: gi|125212327|gb|EL227281.1|EL227281
genomic: ATGTATCATAGTGGAGTTGTGCACGgtgtgtgtct ... agatttgtagGGTGAAGCATTGTTCCAAACACATGAAAACCTGGAGCATCTAGCGATGATG
EST: ATCCGTGTGATGTTTGGAGCGTTGGATGTATCATAGTGGAGTTGTGCACG GGTGAAGCATTGTTCCAAACACATGAAAACCTGGAGCATEST: gi|86086900|gb|DR382659.1|DR382659
genomic: ATCCGTGTGATGTTTGGAGCGTTGGATGTATCATAGTGGAGTTGTGCACGgtgtgtgtct ... agatttgtagGGTGAAGCATTGTTCCAAACACATGAAAACCTGGAGCAT
EST: ATCCGTGTGATGTTTGGAGCGTTGGATGTATCATAGTGGAGTTGTGCACG GGTGAAGCATTGTTCCAAACACATGAAAACCTGGAGCATCTAGCGATGATG
genomic: ATCCGTGTGATGTTTGGAGCGTTGGATGTATCATAGTGGAGTTGTGCACGgtgtgtgtct ... agatttgtagGGTGAAGCATTGTTCCAAACACATGAAAACCTGGAGCATCTAGCGATGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTGGCTGGAGTTATCCGTGTGATGTTTGGAGCGTTGGATGTATCATAGTGGAGTTGTGCACGgtgtgtgtctgaagtagttgattgttaatgaatgtttgggagtcttttattgaaagatttgagatttgtag
- - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG