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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCACAAAACCAAGCAAGTATTAGCCTCTGCCAAGCTGCCTCCGAAAGTTAAATTCTATAACATATATGGGACCAATCTAGAAACCCCTCATAGTGTTTGgtaatatttctagttttgaggtctcagttactgagtgtttcttcgtacaacttgtttcgctttttctaaatttgatttatattctccgctgcag

Basic information

species Arabidopsis thaliana
transcript AT4G19860.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G19860.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA07G34730.1 (Glycine max), 5'ss of exon 8
CTCACAAAACCAAGCAAGTATTAGCCTCTGCCAAGCTGCCTCCGAAAGTTAAATTCTATAACATATATGGGACCAATCTAGAAACCCCTCATAGTGTTTGgtaatatttctagttttgaggtctcagttactgagtgtttcttcgtacaacttgtttcgctttttctaaatttgatttatattctccgctgcag----------------------------------------------------------------------
|  |||||||   | |  |  |  | |||||||| || ||  |  |||||||||| || ||||| |||||||||| ||| || || |||||||||||||||||||   ||||   |  |    |  | |      || ||   | || || | || |    |    |  |||     |  | | |  | ||||                                                                       
CAAACAAAACATGGGAGATTCTGTCTTCTGCCAAACTTCCCTCACAAGTTAAATTTTACAACATTTATGGGACCAGTCTTGACACACCTCATAGTGTTTGgtaatgcctcta---tcaattctttggatgtaccatggttaccc-tagaaatggtattctgtgaagtgtattaacaatggactattggatgcaagtaggtatttataattcttttggaaatatgtgaccactgaccatcactttacataactattattctgcag

upper sequence: AT4G19860.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G02570.1 (Glycine max), 5'ss of exon 8
CTCACAAAACCAAGCAAGTATTAGCCTCTGCCAAGCTGCCTCCGAAAGTTAAATTCTATAACATATATGGGACCAATCTAGAAACCCCTCATAGTGTTTGgtaatatttctag------ttttgaggtctca--gttac---tgagtgtttcttcgtacaacttgtttcgctttttcta--------aatttg--atttatattctccgctgcag---------------------------------------------
|  |||||||   | |  |  |  | |||||||| || ||  || |||||||||| || ||||| |||||||||| ||| || || ||||||||||||||||||    ||||       ||| || ||  ||  |||||   |||     | || ||  |   | ||  |  |   |||        || | |  ||||||| |       | |                                              
CAAACAAAACATGGGAGATTCTGTCTTCTGCCAAACTTCCCTCGCAAGTTAAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctctatcaattctttggatgtaccatggttacccttgaaatggtatttgtgaagtgtattaagaatggactagtggatacaagtaggtatttataattcttttggaaatatatgaccaactgatcatcactttgcataactattattctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124759705|gb|EH849835.1|EH849835
EST:     TATGGGACCAATCTAGAAACCCCTCATAGTGTTTG                         CTATGGGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTT
genomic: TATGGGACCAATCTAGAAACCCCTCATAGTGTTTGgtaatatttc ... tccgctgcagCTATGGGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTT
EST: gi|86073385|gb|DR369142.1|DR369142
EST:     AAATTCTATAACATATATGGGACCAATCTAGAAACCCCTCATAGTGTTTG                         CTATGGGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTT
genomic: AAATTCTATAACATATATGGGACCAATCTAGAAACCCCTCATAGTGTTTGgtaatatttc ... tccgctgcagCTATGGGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTT