1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGAGCATTGGATGATGTTGTAATGGGAGGTGTCAGCGAAAGTAACTTCATAGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAGgtttgataagataacaactctatttgccattttccttctcttggggttttacttatataagcataacatgttttgttag
species | Arabidopsis thaliana |
transcript | AT4G18810.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAG GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAGEST: gi|125185077|gb|EL200031.1|EL200031
genomic: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAGgtttgataag ... gttttgttagGAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAG
EST: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAG GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGEST: gi|125157993|gb|EL186803.1|EL186803
genomic: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAGgtttgataag ... gttttgttagGAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTG
EST: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAG GAATTGTTTCCACAACAAAEST: gi|125037275|gb|EL109544.1|EL109544
genomic: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAGgtttgataag ... gttttgttagGAATTGTTTCCACAACAAA
EST: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAG GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAEST: gi|86064608|gb|DR360365.1|DR360365
genomic: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAGgtttgataag ... gttttgttagGAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGA
EST: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAG GAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAG
genomic: AGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAGgtttgataag ... gttttgttagGAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCGAACCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCATTGGATGATGTTGTAATGGGAGGTGTCAGCGAAAGTAACTTCATAGTAGATCTAACCGCTGGTGAAAACGGTGGACCTACCGGAATTTTTAAAGgtttgataagataacaactctatttgccattttccttctcttggggttttacttatataagcataacatgttttgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA