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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTAACCGAGAAACAACACAAAGAATCTGCTCCTCCTGCGATTCCAACAGAGAACGGCTCAGAGAAAACGTCATACTTTCTTGCTGAAgtaagttttatcttccgtaatattatcatcgcatatctcacagaaagaaaaagactctccataagcaacatatatgttctctcgcag

Basic information

species Arabidopsis thaliana
transcript AT4G18060.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G18060.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv10s0003g02590.t01 (Vitis vinifera), 5'ss of exon 8
ATGGTAACCGAGAAACAACACAAAGAATCTGCTCCTCCTGCGATTCCAACAGAGAACGGCTCAGAGAAAACGTCATACTTTCTTGCTGAAgtaagttttatct-tccgtaatattatcatcgcatatctcacagaaagaaaaagactctccata-agcaacatatatgttctctcgcag-----------
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ATGGTCTCGGAAAAACAAAGGAAAGAATCTGCTCCTCCTGCCATTCCATCAGAGAGCCACTCAGAGAAGACGATGTACTTCTTGGCTGAAgtaggttataaatgtctccaatctcagaaatcaaaactttgtgcttgcaaatcgcttcaaggaagaatgacttgtattgtacttcatatttaaatcttat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058789|gb|DR354546.1|DR354546
EST:     CGATTCCAACAGAGAACGGCTCAGANNAAACGTCATACTTTCTTGCTGAA                         GTGATTCATCCATTTTCCGCTGCTTCAGAGAAAGAGTTAGACTTGGACAAA
genomic: CGATTCCAACAGAGAACGGCTCAGAGAAAACGTCATACTTTCTTGCTGAAgtaagtttta ... tctctcgcagGTGATTCATCCATTTTCCGCTGCTTCAGAGAAAGAGTTAGACTTGGACAAA