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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCGCCCAAGACTTTTATTCCAGCTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTCTCAAGTGCTATGCGgtacttacataattgcggtttttatgttcaagcatatcaatcctttttcatttttatgtacctatcttctggaaatttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G17150.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G17150.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA07G40050.1 (Glycine max), 5'ss of exon 9
GTTTCGCCCAAGACTTTTATTCCAGCTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTCTCAAGTGCTATGCGgtacttacataattgcggtttttatgttcaagcatatc---aatcctttttcatt-tttatgtacctatcttctggaaatttgcag--------------------
||| | || ||||| || ||||| | ||||||||| ||||||||||  ||||||||||| || ||||| || ||||| |||||     |   |||||| ||| | |  || |     | |||  |    |   | |    || |  | | ||   ||| |  |    |   |   | || |                        
GTTGCACCGAAGACATTCATTCCTGTTTTATTTGGACATGCAAGCGATGACAAATTCATTCAGCCTCACCATTCTGATCTCATCTCTGAAGCCTATGCAgtattaatctattccaaatctttgagaatgaaattttttgaaagcaatctgcaccatttttccattggtagccaaaatatctaatcattgtttctgatttttgtag

upper sequence: AT4G17150.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA17G00770.1 (Glycine max), 5'ss of exon 9
GTTTCGCCCAAGACTTTTATTCCAGCTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTCTCAAGTGCTATGCGgtacttacataattgcggtttttatgttcaagcatatcaa------------tcctttttcattttta-----tgtacctatcttctggaaatttgcag
||| | || ||||| || ||||| | ||||||||| ||||||||||  ||||||||||| || ||||| || ||||| |||||     |   |||||| ||| | |  || |     |||  |   | ||   | | ||             | |||| ||||  ||       |||||||  | |     |||| ||
GTTGCACCAAAGACATTCATTCCTGTTTTATTTGGACATGCAAGCGATGACAAATTCATTCAGCCTCACCATTCTGATCTCATCTCTGAAGCCTATGCAgtattaatttattccaaatttggagaatgaaattttttaaagcaatctgcaccctttttccattggtagccaaaatacctattcttttttt-tttgtag

upper sequence: AT4G17150.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv00s0475g00050.t01 (Vitis vinifera), 5'ss of exon 2
GTTTCGCCCAAGACTTTTATTCCAGCTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTCTCAAGTGCTATGCGgtacttacataatt-----------gcggtt----tttatgttcaagcatatcaatc--ctttttcatttttatgtacctatcttctggaa-atttgcag
||| | || || || |||||||| ||| ||||||| ||||| |  |  ||||||||||| ||||| || ||||||||| ||||| |||||| |||| ||||| |||  | |||           | ||||    ||||     | ||||  ||||   | | || ||    || |  | || || |  |  || |||||
GTTGCACCTAAAACATTTATTCCTGCTCTATTTGGCCATGCTACTGAGGACAAATTCATTCAACCCCACCACTCTGACATCATTTTCAAGTCCTATTCGgta-ttatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaattggcgtctttatgaaaattttaccatattgtttattatgtgcag