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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTAAGAATACGCAGGACTCGTGAGGCAAATCAGGAAGCTGTTCTTCTATCATTGTGCACAAGGACTTTTAAATCAAAAGTCATTATCTTTAGgttagaagccactataaatatgatgcctttcaaatccaagttccataaagtgcttgcatagtttggcattttgtatttcagctgagagaattttttgtcccttcttgcgccag

Basic information

species Arabidopsis thaliana
transcript AT4G16630.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G16630.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA09G15220.1 (Glycine max), 5'ss of exon 7
GGTGGTAAGAATACGCAGGACTCGTGAGGCAAATCAGGAAGCTGTTCTTCTATCATTGTGCACAAGGACTTTTAAATCAAAAGTCATTATCTTTAGgttagaa----gcca-ctataaatatgatgcctttcaaatccaagttccataaagtgcttgcatagtttggcattttgtatttcagctgagagaattttttgtcccttcttgcgccag---------------------------
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GGTTGTTAGAATACGAAGAATGAGTGAAGTAAATCAGGAAGCTGTTCTTCTTTCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGgttttcatttcatcatctacaagtctttttatttcagattttaagtctgctccttcatttgcactgctttatgattattatttcccttctgccactattctgctacctctaaccaaactgtaaaatctatcattttgatgtgcag