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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTGTCAATCTGCTTCAAAATGCGGAGTTTGATATAAAGAAAGAAGCTGCGTGGGCAATATCAAATGCCACTTCAGGTGGTTCTCCTGACCAAATCAAgtaagattatccgatataaactccatgttctgttgatctcaactcctttagaatctttgttggttatttttcaaacagtcaattaagttattccgttgtgtgttttag

Basic information

species Arabidopsis thaliana
transcript AT4G16143.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G16143.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 9
CTCTTGTCAATCTGCTTCAAAATGCGGAGTTTGATATAAAGAAAGAAGCTGCGTGGGCAATATCAAATGCCACTTCAGGTGGTTCTCCTGACCAAATCAAgtaagattatccgatataaact--ccatgttctgttgatctcaactcctttagaatc--tttgttggttatttttcaaacagtcaattaagttattccgttgtgtgttttag--------
|||| || |||||||| ||||  || ||||| ||||| ||||| |||||||| ||||| || |||||||| |||||||| |||   | ||| ||||||||||| | |||  |    |  ||      | ||| | |      ||  |   || || |  |||  | |||   | | || |  |  |||  | | |    |||| || |||          
CTCTGGTGAATCTGCTCCAAACGGCAGAGTTCGATATCAAGAAGGAAGCTGCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagc--ttcatttggatttgatattgtatggtttgttaaaatag

upper sequence: AT4G16143.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 9
CTCTTGTCAATCTGCTTCAAAATGCGGAGTTTGATATAAAGAAAGAAGCTGCGTGGGCAATATCAAATGCCACTTCAGGTGGTTCTCCTGACCAAATCAAgtaagattatccgatataaactccatgttctgttgatct---caactcctt----tagaatctttgttggttatttttcaaacagtcaattaagttattccgttgtgtgttttag--
|| |  |  | ||||||||||  || ||||||||||| ||||| || ||||| ||||| || |||||||| || || |||||||||| ||| |||||||||||   |     ||  |   || ||    || |||   |   ||  |   |    |  ||  | |||  || |  |||  ||| |  |||| ||   |   ||| ||| ||  |   
CTTTGTTGCAACTGCTTCAAACAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAATGCTACCTCTGGTGGTTCTCATGAGCAAATCAAgtatactaccttgacttg--ctgcactgccttttggcttgtgcagttgtgtgcaatgcaacttatgtatgtcaccttt-gaacgg--aatttagaactcatgttttgtcttgcatag

upper sequence: AT4G16143.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 8
CTCTTGTCAATCTGCTTCAAAATGCGGAGTTTGATATAAAGAAAGAAGCTGCGTGGGCAATATCAAATGCCACTTCAGGTGGTTCTCCTGACCAAATCAAgtaagattatccgatataa---actccatgttctgttgatc--tcaactcctttagaatctttgttggttatttttcaaacagtcaattaagttattccgttgtgtgttttag---
|| |  |  | |||||||||   || ||||||||||| ||||| || ||||| ||||| || ||||| || || || |||||||| | ||| |||||||||||   |     ||  ||    ||| | | ||   |||  |  |    | |  |  ||  | |||  ||     ||| ||||   |||| ||   |   |||| || ||  |    
CTTTGTTGCAACTGCTTCAAGGAGCAGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCCATCTCAAACGCTACCTCTGGTGGTTCCCATGAGCAAATCAAgtatactatcttgacttactgcactgctttttgccttgtgcagttgtgtgcaatgcaacttatgtatgtctgagttcgaaca--taatttagaactcatgttgcgtcttgcaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86047432|gb|DR343187.1|DR343187
EST:     GCGTGGGCAATATCAAATGCCACTTCAGGTGGTTCTCCTGACCAAATCAA                         GTACATGGTGGAACAGGGAGTCGTGAAAC-ACTGTGTGATCTTTT
genomic: GCGTGGGCAATATCAAATGCCACTTCAGGTGGTTCTCCTGACCAAATCAAgtaagattat ... tgtgttttagGTACATGGTGGAACAGGGAGTCGTGAAACCACTGTGTGATCTTTT
EST: gi|47832136|gb|CK121820.1|CK121820
EST:     GCGTGGGCAATATCAAATGCCACTTCAGGTGGTTCTCCTGACCAAATCAA                         GTACATGGTGGAACAGGGAGTCGTGAAACCACTGTGTGATCTTTTGGTGTG
genomic: GCGTGGGCAATATCAAATGCCACTTCAGGTGGTTCTCCTGACCAAATCAAgtaagattat ... tgtgttttagGTACATGGTGGAACAGGGAGTCGTGAAACCACTGTGTGATCTTTTGGTGTG