1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTCAATGAGTGCACCGTCATTGCAACCTCTTCAAGGAGTCCCTTCTGGTGGCCTGCAGTCTTCTGAAGTTAAACCTTCGGGAAGATCAGAATTACCTGCGgtattcaatttattttagccatttggtctctcccatcactatatcttaccatgtgtgggattgtgatgacatgctaacctgtatgcag
species | Arabidopsis thaliana |
transcript | AT4G13350.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCTTCTTGAAGTTAAACCTTCGGGAAGATCAGAATTACCTGCG GATTTATTCGCTGTTAAACTACCCATCATACCATGCACCAGTGCCTGGATGEST: gi|116458993|gb|EG501585.1|EG501585
genomic: TCTTC-TGAAGTTAAACCTTCGGGAAGATCAGAATTACCTGCGgtattcaatt ... ctgtatgcagGATTTATTCGCTGT-AAACTACCCATCATACCATGCACCAGTGCCTGGATG
EST: GCCTGCAGTCTTCTGAAGTTAAACCTTCGGGAAGATCAGAATTACCTGCG GATTTATTCGCTGTAAACTACCCATCATACCATGCACCAGTGCCTGGATGG
genomic: GCCTGCAGTCTTCTGAAGTTAAACCTTCGGGAAGATCAGAATTACCTGCGgtattcaatt ... ctgtatgcagGATTTATTCGCTGTAAACTACCCATCATACCATGCACCAGTGCCTGGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAATGAGTGCACCGTCATTGCAACCTCTTCAAGGAGTCCCTTCTGGTGGCCTGCAGTCTTCTGAAGTTAAACCTTCGGGAAGATCAGAATTACCTGCGgtattcaatttattttagccatttggtctctcccatcactatatcttaccatgtgtgggattgtgatgacatgctaacctgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA