Sequence
atgc intronic sequence ATGC exonic sequenceAAACTTCAGACAACTGTTATGAATAGTAATTTGAACCCGGTATGGAATCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGgtaagagcaaattcattttctattgacgatttcagtcattgccaaagcttatatatatatcttacggtttcttatgtggttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G05330.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA05G29940.1 (Glycine max), 5'ss of exon 6
AAACTTCAGACAACTGTTATGAATAGTAATTTGAACCCGGTATGGAATCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGgtaagag-caaattcattttctattgacgatttcagtcattgccaaagcttatatatatatcttacggt-ttcttatgtggttgcag---------------
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ACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTGgtaaggttcaatttcatcttgtcttgttagaa--aatggaaacaaattctgtgatgcttatttggtggtacttctatttggatcttcatatgtgatactttt
upper sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G13070.1 (Glycine max), 5'ss of exon 6
AAACTTCAGACAACTGTTATGAATAGTAATTTGAACCCGGTATGGAATCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGgtaagagcaaatt-cattttctattg-------------acgatttcagtcattgccaaagcttatatatatatcttacggtttcttatgtggttgcag----------------------------------------------------------------------------------------------------
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ACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTGgtaagattgaatttcatcttgtattgttagaaaatggaaacaaattctgtgatgcttattcggtgtttggatat-ttggatcttcatgtgtgatacttctatttgtctgtatgtgtgttttggtacagaagatacaaaattgatttctggtgtaaaaacatgtaattttatcctaactgctggttacattgcattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125187616|gb|EL202570.1|EL202570EST: ATCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTG CAAGTGTATGATTA
genomic: ATCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGgtaagagcaa ... gtggttgcagCAAGTGTATGATTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAACTTCAGACAACTGTTATGAATAGTAATTTGAACCCGGTATGGAATCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGgtaagagcaaattcattttctattgacgatttcagtcattgccaaagcttatatatatatcttacggtttcttatgtggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT