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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGCGTCATTATTGTCAAACTAGCTGACCGGTTGCATAATATGCGAACTCTCTGCCACATGCCTCCCCATAAGCAGgtgattctttcaagtagttgagatttgttgcccatagctccagctctatgtttcatttgggataactaatgaatttgtgagtttcgtccag

Basic information

species Arabidopsis thaliana
transcript AT4G02260.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02260.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G353147_T01 (Zea mays), 5'ss of exon 7
GTCCGCGTCATTATTGTCAAACTAGCTGACCGGTTGCATAATATGCGAACTCTCTGCCACATGCCTCCCCATAAGCAGgtgattctttcaagtag--ttgagatttgttgcccatagctccagctctatgtttcatttgggataactaatgaatttgtgagtttcgtccag
|| || || |||||||||||||| || ||| |||||||||| ||||| ||||||   || |||||||  || |||||||||| |  ||     ||  || |||| || |||   |  || |  | ||| ||   | |  | || ||||     ||||              
GTTCGTGTGATTATTGTCAAACTGGCAGACAGGTTGCATAACATGCGCACTCTCACACATATGCCTCAGCACAAGCAGgtgaattcttattccagatttaagatatgctgcatcttacttccaccctaagt---actaagcatgacta-----tttgcag-----------

upper sequence: AT4G02260.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv07s0005g00770.t01 (Vitis vinifera), 5'ss of exon 8
GTCCGCGTCATTATTGTCAAACTAGCTGACCGGTTGCATAATATGCGAACTCTCTGCCACATGCCTCCCCATAAGCAGgtgattctttcaagtagttgagatttg--ttgcccatagctccagctctatgtttcatttgggataactaatgaatttgtgagtttcgtccag
|||||||| || |||||||||||||| ||| | || ||||||||||| ||||| |  ||||||||||| ||||||||||| ||||| |     | |||   |||   ||||  ||| ||     ||||  | ||||     || || | |    || ||  |   |     
GTCCGCGTTATAATTGTCAAACTAGCCGACAGATTACATAATATGCGCACTCTTTCTCACATGCCTCCACATAAGCAGgtaattctatttttcatttggtttttagtttgctaataactg----tctacttctcatc-atcattaccattattattctgtttccag-----