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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACATTGGAGGTCATGCTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttatacattttcgtgagatttttttatcgagaattcgaaattaaccgaaatttataacgttcttggtttgtattttctcttgtgtttag

Basic information

species Arabidopsis thaliana
transcript AT4G01610.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125153730|gb|EL184733.1|EL184733
EST:     GGAACTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
genomic: GGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
EST: gi|116481390|gb|EG523982.1|EG523982
EST:     CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
genomic: CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
EST: gi|116483179|gb|EG525771.1|EG525771
EST:     CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
genomic: CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
EST: gi|125091030|gb|EL148853.1|EL148853
EST:     TTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGGTTATT
genomic: TTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGGTTATT
EST: gi|125315980|gb|EL330065.1|EL330065
EST:     TGTTAAACTTATTGGTTGGGGAACTTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGGTTA
genomic: TGTTAAACTTATTGGTTGGGGAAC-TAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGGTTA
EST: gi|163996981|gb|ES065551.1|ES065551
EST:     TGTTAAACTTATTGGTTGGGGAACCTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGG
genomic: TGTTAAACTTATTGGTTGGGGAA-CTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGG
EST: gi|124713587|gb|EH804989.1|EH804989
EST:     CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGA
genomic: CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGA
EST: gi|164124038|gb|ES072908.1|ES072908
EST:     CTGTTAAACTTATTGGTTGGGGAACCAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGG
genomic: CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGG
EST: gi|125104730|gb|EL158721.1|EL158721
EST:     CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGA
genomic: CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGA
EST: gi|124889859|gb|EH968761.1|EH968761
EST:     TTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
genomic: TTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
EST: gi|124780843|gb|EH870786.1|EH870786
EST:     CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGT
genomic: CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGT
EST: gi|125188929|gb|EL203883.1|EL203883
EST:     AAGGAGAAGATTATTGG                         TTGATGGCAAATTCAATGGAACAGAGGCTGGGGTGAT
genomic: AAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAA-TCAATGGAACAGAGGCTGGGGTGAT
EST: gi|124834933|gb|EH919372.1|EH919372
EST:     AACTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
genomic: AACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
EST: gi|116483180|gb|EG525772.1|EG525772
EST:     CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
genomic: CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
EST: gi|125043859|gb|EL116128.1|EL116128
EST:     GTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
genomic: GTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
EST: gi|86077484|gb|DR373241.1|DR373241
EST:     CTGTTAAACTTATTGGTTGGGGAACCAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
genomic: CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
EST: gi|164213446|gb|ES041717.1|ES041717
EST:     CTGTTAAACTTATTGGTTGGGGAACCAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTNATGATGG
genomic: CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGATGATGG
EST: gi|125019770|gb|EL092039.1|EL092039
EST:     AAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
genomic: AAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
EST: gi|163965954|gb|ES064886.1|ES064886
EST:     GTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
genomic: GTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
EST: gi|125032196|gb|EL104465.1|EL104465
EST:     CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGG                         TTGATGGCAAATCAA
genomic: CTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAA
EST: gi|125035407|gb|EL107676.1|EL107676
EST:     TTGGTTGGGGAACTAGCAGTGAAGGAGAAGTATTATTGG                         TTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT
genomic: TTGGTTGGGGAACTAGCAGTGAAGGAGAAG-ATTATTGGgtaatgttat ... ttgtgtttagTTGATGGCAAATCAATGGAACAGAGGCTGGGGTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAATCTGGAGTCTATAAGCACATAACAGGTTCTAACATTGGAGGTCATGCTGTTAAACTTATTGGTTGGGGAACTAGCAGTGAAGGAGAAGATTATTGGgtaatgttatacattttcgtgagatttttttatcgagaattcgaaattaaccgaaatttataacgttcttggtttgtattttctcttgtgtttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA