1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTACAGGGCCCCAGAACTTATATTTGGGGCGACAGAGTATACCAATGCCATTGACATGTGGTCCGGCGGTTGTGTCATGGCAGAGCTTTTACTTGGTCAAgtaagtatattatacattgtagagtttcggttatgatgaaccattttattttgattgatcagttttcattattacttcgaaataacatttaatctgataacaactgttgattttctacccgtag
species | Arabidopsis thaliana |
transcript | AT4G00720.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTGACATGTGGTCCGGCGGTTGTGTCATGGCAGAGCTTTTACTTGGTCAA CCACTGTTTCCCGGGGAAAGTGGEST: gi|124969671|gb|EL043559.1|EL043559
genomic: TTGACATGTGGTCCGGCGGTTGTGTCATGGCAGAGCTTTTACTTGGTCAAgtaagtatat ... ctacccgtagCCACTGTTTCCCGGGGAAAGTGG
EST: TTGACATGTGGTCCGGCGGTTGTGTCATGGCAGAGCTTTTACTTGGTCAA CCACTGTTTCCCGGGGAAAGTGGACATTGATCAGCTGGTGGAGAEST: gi|164203535|gb|ES138960.1|ES138960
genomic: TTGACATGTGGTCCGGCGGTTGTGTCATGGCAGAGCTTTTACTTGGTCAAgtaagtatat ... ctacccgtagCCACTGTTTCCCGGGGAAAGTGG-CATTGATCAGCTGGTGGAGA
EST: TTGACATGTGGTCCGGCGGTTGTGTCATGGCAGAGCTTTTACTTGGTCAA CCACTGTTTCCCGGEST: gi|125163843|gb|EL190613.1|EL190613
genomic: TTGACATGTGGTCCGGCGGTTGTGTCATGGCAGAGCTTTTACTTGGTCAAgtaagtatat ... ctacccgtagCCACTGTTTCCCGG
EST: TTGACATGTGGTCCGGCGGTTGTGTCATGGCAGAGCTTTTACTTGGTCAA CCACTGTTTCCCGGGGAAAG
genomic: TTGACATGTGGTCCGGCGGTTGTGTCATGGCAGAGCTTTTACTTGGTCAAgtaagtatat ... ctacccgtagCCACTGTTTCCCGGGGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACAGGGCCCCAGAACTTATATTTGGGGCGACAGAGTATACCAATGCCATTGACATGTGGTCCGGCGGTTGTGTCATGGCAGAGCTTTTACTTGGTCAAgtaagtatattatacattgtagagtttcggttatgatgaaccattttattttgattgatcagttttcattattacttcgaaataacatttaatctgataacaactgttgattttctacccgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT