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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGACAAAACTTTGCGAAGATGTTTGAGATCAACTTTGAGAATGAGAAAGCAGAGACAGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGgtaaatacttggaagtacttagattatttttctcatgtgctctacaactgttaacttatcattttcaaaccttttatag

Basic information

species Arabidopsis thaliana
transcript AT3G62120.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G62120.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os12g25710.2 (Oryza sativa), 5'ss of exon 9
GGGACAAAACTTTGCGAAGATGTTTGAGATCAACTTTGAGAATGAGAAAGCAGAGACAGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGgtaaatacttggaagtacttagattatttttctcatgtgctctacaactgttaacttatcattttcaa------accttttatag----------------
 || ||||||||||| ||||||||||| ||||  ||||||||||| || |     | |   |||||||||||||| |||||||| ||||  ||| |  |||||| | ||   |  |  ||| ||| |       |  ||   |     | ||   ||  | |||| ||      |  ||||| |                 
TGGTCAAAACTTTGCAAAGATGTTTGATATCACTTTTGAGAATGATAAGGGCTCAAGATCCATGGTGTGGCAGAACTCTTGGGCATACACCACCCGCTCGgtaatt-ctcatatattgttaaattttggaatgtacctggaattttcttcttgttttgcccttttgaagtggtaatgttttacaaaagaaatgaggctttt

upper sequence: AT3G62120.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G094123_T01 (Zea mays), 5'ss of exon 8
GGGACAAAACTTTGCGAAGATGTTTGAGATCAACTTTGAGAATGAGAAAGCAGAGACAGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGgtaaat---acttggaagtacttagat-tatttttctcatgtgctctacaactgttaacttatcattttcaaaccttttatag----------------------
 || ||||||||||| ||||||||||| ||||  ||||||||||||||||  |  |  |||||||| ||||| || |||||||||||||  ||| |  |||||  |   |||     |   | ||||  ||  | |     || | |     ||  || | ||   |||||    |||| |||                      
TGGTCAAAACTTTGCCAAGATGTTTGATATCACTTTTGAGAATGAGAAAGGTGTTAGGGAAATGGTTTGGCAAAACTCTTGGGCCTACACAACCCGCTCGgtacttctcactcctttgatttaagatgcatcatgcatgattgatgtggggatgggaa-tgattgctttca----ttttgtaggctgcacctgatacttttgtcc

upper sequence: AT3G62120.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA03G38340.1 (Glycine max), 5'ss of exon 9
GGGACAAAACTTTGCGAAGATGTTTGAGATCAACTTTGAGAATGAGAAAGCAGAGACAGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGgtaaatacttggaagtacttagattatttttctcatgtg----ctctacaac-tgtta-acttatcattttcaaaccttttatag
||| ||||| ||||| || ||||||||||| |||||||| ||||| || | ||||| || |||||| ||||||||||| |||||||| |||||  | || ||||   ||| ||  |  | |   ||  ||  |     |    ||||||| | | ||  | ||||  || |      ||| | ||
GGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAAAGGGAGAGAGAGCAATGGTCTGGCAGAATTCATGGGCCTATAGTACTCGAACTgtaag--ctttgatttcttgaatatacattcattggaggattcctctacatcatattgcatttatatttctgttttttttaacag

upper sequence: AT3G62120.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA19G40930.4 (Glycine max), 5'ss of exon 9
GGGACAAAACTTTGCGAAGATGTTTGAGATCAACTTTGAGAATGAGAAAGCAGAGACAGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGgtaaatacttggaagtacttagat-tatttttctcatg----tgctctacaactgttaacttatcattttcaaaccttttatag
||| ||||| ||||| || ||||||||||| |||||||| ||||| || | ||||| || |||||| ||||||||||| |||||||| |||||  | || ||||    |   || | |||  || ||  ||  |        | ||||||| |   |  | | |   |||      ||| | ||
GGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAAAGGGAGAGAAAGCAATGGTCTGGCAGAATTCATGGGCCTATAGTACTCGAACTgtaagcttt---aatttcttgaatatacattcattggaggattcctctacatcatattgcatctatatttgttttttttaacag

upper sequence: AT3G62120.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 9
GGGACAAAACTTTGCGAAGATGTTTGAGATCAACTTTGAGAATGAGAAAGCAGAGACAGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGgtaaatacttggaagtacttagattatttttctcatgtgct----ctacaactgttaacttatcattttcaa-----accttttatag------------
 || ||||| ||||| || |||||||| || | |||||| |||||||| | ||| |  |  ||||| ||||||||||| ||||||||||||||||| ||||||||||  ||  | |  ||   ||    ||   | || ||      ||| |  |||  ||  ||            |  ||| ||              
AGGTCAAAATTTTGCAAAAATGTTTGATATAACCTTTGAAAATGAGAAGGGAGAAAAGGCTATGGTCTGGCAGAATTCCTGGGCCTACAGTACCAGAACGgtaaataaatgacattttttttgtttgagttgaaaagttctaatttaacagcaattatgtttccaaaagggggggataattttcatgcatgggatttctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164050754|gb|ES103519.1|ES103519
EST:     AGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACG                         ATTGGAGTGATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCT
genomic: AGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGgtaaatactt ... ccttttatagATTGGAGTGATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCT