Sequence
atgc intronic sequence ATGC exonic sequenceATTTAGGAGCCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTGATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAGgtactctcttatttttcaactcttcttcttcctccggtttcactagtcttgaatcagattgaactagatttggtacaatgaataataaattgaaaaccca...
Basic information
species | Arabidopsis thaliana |
transcript | AT3G61700.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G61700.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA16G02860.2 (Glycine max), 5'ss of exon 8
ATTTAGGAGCCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTGATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAGgtactctcttatttttcaactcttcttcttcctccggtttcactagtcttgaatcagat--tgaac--tagatttggtacaatgaataataaattgaaaaccca
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ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaaata---catatatatcttatttttaaatgtcctaaattttaaaactgttgatgaatagtagtagtggtccaac-aatagtgagctgacaatcaa
upper sequence: AT3G61700.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA07G06230.2 (Glycine max), 5'ss of exon 8
ATTTAGGAGCCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTGATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAGgtactctcttatttttcaactcttcttcttcctccggtttcactagtcttgaatcag-attgaactagatttggtacaatgaataataaattgaaaaccca---
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ATCTAGGAGCTCTGGGAAACTATCCTGGTTCACCATTTTTGCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaaatacat--atatatcttgtttttaaatgtcctcaattttaaaattattgatgaataatagttgcc-caac-aatattttgttaacaatcaaata
upper sequence: AT3G61700.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 8
ATTTAGGAGCCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTGATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAGgtactctcttatt---tttcaactct-tcttcttcctccggtttcactagtcttgaatcagattga-actagatttggtacaatgaataataaattgaaaaccca
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ATCTAGGAGCTTTGGGAAACTACCCCGGTTCTCCCTTTCTGGGTTCTGATTCAGACATTTTGCTTGATTCTCCGGAGCAAGAGGATATAGgtaatttgaaattgcatctctgtcctattttctttctcacaatgcaa-attctccatctgggaagacacatgattttgtatc-taaatggaatggttataag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86079736|gb|DR375493.1|DR375493EST: TCCATCTGATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAG AGGAGTTTTTCGTGGATTCGGTGCCTGGACCTCGTTCTAATTCAGATGAAG
genomic: TCCATCTGATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAGgtactctctt ... gtatgaatagAGGAGTTTTTCGTGGATTCGGTGCCTGGACCTCGTTCTAATTCAGATGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTAGGAGCCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTGATTCAGAGATTTTCCTGGATTCTCCTGAACAAGAGGACATAGgtactctcttatttttcaactcttcttcttcctccggtttcactagtcttgaatcagattgaactagatttggtacaatgaataataaattgaaaaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaaa