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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGAGGATCAAATGTTGGAGGAGGCACTTTTAAAAGATGAAAAACAGTGTGCAGAACACATCATGCTCGTTGACTTGGGTCGCAATGATGTTGGAAAGgttagtctgtttctcaggatcaaatctggtttatatattcttggtttaagcaatgatgaaaaacgatcaatgatcattaacttacgtacttctatgccaatcttttctcttacaaagaatatttcaaatttgaacatatagtattgtctaatatctcattggctctctctgggccttatgaaaccag

Basic information

species Arabidopsis thaliana
transcript AT3G55870.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55870.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os03g15780.4 (Oryza sativa), 5'ss of exon 8
CGAGGAGGATCAAATGTTGGAGGAGGCACTTTTAAAAGATGAAAAACAGTGTGCAGAACACATCATGCTCGTTGACTTGGGTCGCAATGATGTTGGAAAGgttagtctgtttctcaggatcaaatctggtttatatattcttggtttaagcaatgatgaaaaacgatcaatgat-cattaacttacgtacttctatgccaatcttttctcttacaaagaatatttcaaatttgaacatatagtattgtctaatatctcattggctctctctgggccttatgaaaccag
  |||| ||| |||||   ||| |    ||  |||  ||||||||||||||||| ||||| || ||||| || || |||||  | |||||||||||||||||| || |  || |          | | | |     | || |||||  |  |||     | |    | |   ||   |||||  |  |  |  ||||   |  || |   |  ||                                                                         
GAAGGAAGATGAAATGCAAGAGCAACAGCTACTAAGTGATGAAAAACAGTGTGCTGAACATATTATGCTTGTAGATTTGGGAAGGAATGATGTTGGAAAGgtttgtgttcttttt---------tttcgatggctgagtcatggttgcattaatttgacagatttgttaggaatgtgttaac--aacttttcttatgattactttctacttggcag------------------------------------------------------------------------

upper sequence: AT3G55870.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G161337_T02 (Zea mays), 5'ss of exon 7
CGAGGAGGATCAAATGTTGGAGGAGGCACTTTTAAAAGATGAAAAACAGTGTGCAGAACACATCATGCTCGTTGACTTGGGTCGCAATGATGTTGGAAAGgttagt--ctgtttctcaggatcaaatctggtttatatattcttggtttaagcaatgatg-aaaaacgatcaatgatcattaacttacgtacttctatgccaatcttttctcttacaaagaatatttcaaatttgaacatatagtattgtctaatatctcattggctctctctgggccttatgaaaccag
  |||| |||||||||   ||| |   ||| ||||  ||||||||||||||||| || ||||| ||||| || ||||||||  | ||||||||||| |||||  ||   | ||| ||   || | | ||   | ||||| |      ||      ||||  ||| || ||     ||  ||   ||  | | ||     |||  |                                                                                     
GAAGGAAGATCAAATGCAAGAGCAACAACTGTTAAGTGATGAAAAACAGTGTGCCGAGCACATAATGCTTGTGGACTTGGGAAGGAATGATGTTGGCAAGgtctgtatttctttttccctattagaactccataatatagtaca---ttgcattctgatataaatacaat--gctatttttcctttgggaaatttggatccatac-------------------------------------------------------------------------------------

upper sequence: AT3G55870.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G03260.1 (Glycine max), 5'ss of exon 8
CGAGGAGGATCAAATGTTGGAGGAGGCACTTTTAAAAGATGAAAAACAGTGTGCAGAACACATCATGCTCGTTGACTTGGGTCGCAATGATGTTGGAAAGgttagtc-----tgtttctcaggatcaaatctggtttatatattcttggtttaagcaatgatgaaaaacgatcaatgatcattaacttacgtacttctatgccaatcttttctcttacaaagaatatttcaaatttgaacatatagtattgtctaatatctcattggctctctctgggccttatgaaaccag
 || || |||  || ||| || |    |||  | | ||||||||| ||||||||||| ||  ||||| | ||||| ||||| ||||||||||||||||||||| |       |   | | |      | ||   ||||| |||  |  ||| |||   |  ||||  |  | |       ||||  ||   || ||  |                                                                                             
TGAAGAAGATGCAAGGTTAGAAGCAATACTGCTGAGAGATGAAAAGCAGTGTGCAGAGCATGTCATGTTGGTTGATTTGGGACGCAATGATGTTGGAAAGgtttgctatagatacattttaatggatattcctatttatttatctt--gttcaaggtgtcttgaagcaatagcttgctcaattatattgtttatttaaagaa------------------------------------------------------------------------------------------

upper sequence: AT3G55870.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G03270.1 (Glycine max), 5'ss of exon 7
CGAGGAGGATCAAATGTTGGAGGAGGCACTTTTAAAAGATGAAAAACAGTGTGCAGAACACATCATGCTCGTTGACTTGGGTCGCAATGATGTTGGAAAGgttagtctgtttctcaggatcaaatctggtttata-tattcttggtttaagcaatgatgaaaaacgatcaatgatcattaacttacgtacttctatgccaatcttttctcttacaaagaatatttcaaatttgaacatatagtattgtctaatatctcattggctctctctgggccttatgaaaccag
 || || |||  || ||| || |    | |  | | ||||||||| ||||||||||| ||  ||||| | ||||| ||||| ||||||||||||||||||||| ||     | | |  ||  ||| |  |  ||| |  | || ||||      || | ||      |  | |  || || |||    | || |||     || |||                                                                                 
TGAAGAAGATGCAAGGTTTGAAGCAATATTGCTGAGAGATGAAAAGCAGTGTGCAGAGCATGTCATGTTGGTTGATTTGGGACGCAATGATGTTGGAAAGgtttgt-----tataaatattcaatataatggatactcctatttgtttttttcctgttcaaggtgtcttgaag--caatagcttggtcaattatat--tgttcatttaa-------------------------------------------------------------------------------

upper sequence: AT3G55870.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv13s0067g00400.t01 (Vitis vinifera), 5'ss of exon 8
CGAGGAGGATCAAATGTTGGAGGAGGCACTTTTAAAAGATGAAAAACAGTGTGCAGAACACATCATGCTCGTTGACTTGGGTCGCAATGATGTTGGAAAGgttagtctgtttctcaggatcaaatctggtttatatattcttggtttaagcaatgatgaaaaacgatcaatgatcattaacttacgtact-tctatgccaatcttttctcttacaaagaatatttcaaatttgaacatatagtattgtctaatatctcattggctctctctgggccttatgaaaccag
| | || ||| | |||||||| | |  |||  |||| ||||||||||| |||||||||||||| ||||| |||||  |||| || ||| ||||||||||||||      | ||| |    | ||  |  |||||  |  | |   ||| | | || | |||           ||   |  ||    |  | | | |||  |  | |                                                                                  
CCATGAAGATGAGATGTTGGAAGGGCAACTGCTAAATGATGAAAAACAATGTGCAGAACACATTATGCTGGTTGATCTGGGGCGAAATAATGTTGGAAAGgtt------tctcttaa---ccaacttcctttatgaaaacatctattatgtagtgtttaaagctttaagcccatagcttgctcgtttggtgtttctgctgaattctatc-------------------------------------------------------------------------------

upper sequence: AT3G55870.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: PP1S154_130V6.1 (Physcomitrella patens), 5'ss of exon 9
CGAGGAGGATCAAATGTTGGAGGAGGCACTTTTAAAAGATGAAAAACAGTGTGCAGAACACATCATGCTCGTTGACTTGGGTCGCAATGATGTTGGAAAGgttagtctgtttctcaggatcaaatctggtttatatattcttggtttaagcaatgatgaaaaacgatcaatgatcattaacttacgtacttctatgccaatcttttctcttacaaagaatatttcaaatttgaacatatagtattgtctaatatctcattggctctctctgggccttatgaaaccag
 || || ||      | ||||| |||   | |||  |||||| ||  | ||||| || ||| ||||||| || ||| | ||||||||||||||||||||||| |  ||   |  |    || ||  |  |    |   | | | |     | |||| |       ||   |    |       | | |  |  | | ||   |                                                                                    
AGATGAAGACATGGCGATGGAGAAGGATTTATTAGCAGATGAGAAGGAATGTGCGGAGCACGTCATGCTTGTGGACCTAGGTCGCAATGATGTTGGAAAGgtaaagctccatgcct---tcgaagtttctcccaaggatttagttcacgtctatgaggcctgttaatgtgtacatacatggccatggagatggaggacatggt------------------------------------------------------------------------------------