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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAGTAAAAAAGGAACAGAAGATGAGCTCACATGTAGTGTTTGCCTAGAACAAGTTACCGTAGGGGAAATCGTTCGCACCTTACCTTGTTTGCATCAGgtttccatttttacttttatcttaaactgaaaatcttccagctctttactgtgtcacgactcagacatatatccgtttgctcag

Basic information

species Arabidopsis thaliana
transcript AT3G55530.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074728|gb|DR370485.1|DR370485
EST:     AACAAGTTACCGTAGGGGAAATCGTTCGCACCTTACCTTGTTTGCATCAG                         TTTCATGCAGGATGTATCGATCCATGGTTGAGACAGCAAGGAACATGTCCT
genomic: AACAAGTTACCGTAGGGGAAATCGTTCGCACCTTACCTTGTTTGCATCAGgtttccattt ... gtttgctcagTTTCATGCAGGATGTATCGATCCATGGTTGAGACAGCAAGGAACATGTCCT
EST: gi|86078329|gb|DR374086.1|DR374086
EST:     AACAAGTTACCGTAGGGGAAATCGTTCGCACCTTACCTTGTTTGCATCAG                         TTTCATGCAGGATGTTTCGATCCATGGTTGAGACAGCAAGGAACATGTCCT
genomic: AACAAGTTACCGTAGGGGAAATCGTTCGCACCTTACCTTGTTTGCATCAGgtttccattt ... gtttgctcagTTTCATGCAGGATGTATCGATCCATGGTTGAGACAGCAAGGAACATGTCCT