1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACTGAGCAAGCTCTTAGAAGGGAAAGTCTCTGTAAATCCCTTAAGCATGGCGATACAAGAGTTCTCTTTGGTTGCCAAAGAAGCCGCAGATGAAGCAAAGgtttctaatggttttgctaattaacgtataacctcaatcttttgcttctttgtctcacctatacatgttttggtgattgatttgcag
species | Arabidopsis thaliana |
transcript | AT3G54720.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGTTCTCTTTGGTTGTCCAAAGAAGCCGCAGATGAAGCAAAG AAGTTAAAGGGAAAATCATATAGCAAAAATGATGTAGCAGCAGCGGCGAAGEST: gi|86083176|gb|DR378935.1|DR378935
genomic: GAGTTCTCTTTGGTTG-CCAAAGAAGCCGCAGATGAAGCAAAGgtttctaatg ... tgatttgcagAAGTTAAAGGGAAAATCATATAGCAAAAATGATGTAGCAGCAGCGGCGAAG
EST: CGAT--AAGAGTTCTCTTTGGTTGCCAAAGAAGCCGCAGATGAAGCAAAG AAGTTAAAGGBAAAATCATATAGCAAAAATGATGTAGCAGCAGCGGCGAAG
genomic: CGATACAAGAGTTCTCTTTGGTTGCCAAAGAAGCCGCAGATGAAGCAAAGgtttctaatg ... tgatttgcagAAGTTAAAGGGAAAATCATATAGCAAAAATGATGTAGCAGCAGCGGCGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGAGCAAGCTCTTAGAAGGGAAAGTCTCTGTAAATCCCTTAAGCATGGCGATACAAGAGTTCTCTTTGGTTGCCAAAGAAGCCGCAGATGAAGCAAAGgtttctaatggttttgctaattaacgtataacctcaatcttttgcttctttgtctcacctatacatgttttggtgattgatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG