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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGATCGGATCTGTGGTCGCCTTCTTCTGATAATGATGATAATTCTACTCCTTCTACACTCTCCGACTCCTTCAACTCTTTCAACTACCAAATGCCAAGgtccctagattcaaccacactttatgttttactccttctacacactttaatttctggtatcaagttgatggtatctaacattgcgttcatgaatcttctcaatag

Basic information

species Arabidopsis thaliana
transcript AT3G51950.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164182986|gb|EL988558.1|EL988558
EST:     CTACACTCTCCGACTCCTTCAACTCTTTCAACTACCAAATGCCAAG                         GTTACCGGCGATTGGAATGTTACCCGGTAGGGGTGGACCAACCT
genomic: CTACACTCTCCGACTCCTTCAACTCTTTCAACTACCAAATGCCAAGgtccctagat ... ttctcaatagGTTACCGGCGATTGGAATGTTACCCGGTAGGGGTGGACCAACCT
EST: gi|164221905|gb|ES063501.1|ES063501
EST:     CCTTCTACACTCTCCGACTCCTTCAACTCTTTCAACTACCAAATGCCAAG                         GTTACCGGCGATTGG
genomic: CCTTCTACACTCTCCGACTCCTTCAACTCTTTCAACTACCAAATGCCAAGgtccctagat ... ttctcaatagGTTACCGGCGATTGG
EST: gi|164185274|gb|ES129974.1|ES129974
EST:     CCTTCTACACTCTCCGACTCCTTCAACTCTT-CAACTACCAAATGCCAAG                         GTTACCGGCGATTGG
genomic: CCTTCTACACTCTCCGACTCCTTCAACTCTTTCAACTACCAAATGCCAAGgtccctagat ... ttctcaatagGTTACCGGCGATTGG